BtaEX6077584 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021318 | SCAMP5
Description
Bos taurus secretory carrier membrane protein 5 (SCAMP5), mRNA. [Source:RefSeq mRNA;Acc:NM_001166565]
Coordinates
chr21:34088422-34092271:-
Coord C1 exon
chr21:34092170-34092271
Coord A exon
chr21:34091629-34091746
Coord C2 exon
chr21:34088422-34091371
Length
118 bp
Sequences
Splice sites
3' ss Seq
CAGCTGGCCTGTCTCTGCAGCGG
3' ss Score
7.1
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GACCGACAGCTCCTTTAGCTTCATGGCATTCTTCTTCACCTTCATGGCCCAGCTGGTCATTAGCATCATCCAGGCCGTGGGCATCCCAGGCTGGGGTGTCTG
Seq A exon
CGGCTGGATCGCCACCATCTCCTTCTTCGGGACGAACATTGGCTCAGCAGTGGTGATGCTCATCCCCACCGTCCTGTTCACGGTCATGGCCGTCTTTTCCTTCATTGCCCTCAGCATG
Seq C2 exon
GTCCATAAATTCTACCGGGGCAGCGGGGGGAGTTTCAGCAAAGCTCAGGAGGAGTGGACCACGGGAGCATGGAAGAACCCGCACGTGCAGCAGGCGGCCCAGAATGCAGCCATGGGGGCCGCACAGGGCGCCATGAATCAGCCGCAGACTCAGTATTCTGCCACCCCCAACTACACATACTCCAATGAGATGTGAACCAGCCAACCGACCGGGAGCTGGCTGGGGGCCGGTGGGGTGGGGGCTCAAACCACAGGGTCTGTTGTGGTGACCAAGCAGGGTTCCCCCTTCCCTTTTTCTCCTCCCCCACTTTGTACAAAGAATCAGAGTTATATATATATATATACGTATATGTGCCCCCCTCCCCCACACCCTCTGGACTCTGCTCCCAGCACCCTGAGCGCTGTGGGCTGCACTTGGAGCTGTCCCGTGCGGCGGTAGTAGTGTCTGTGTCCCCTTGTGAATAGTGTGCAGTGGAGGTCTCTGTTGTTGTGGTGCTAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021318-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.2=100)
A:
PF041448=SCAMP=FE(22.0=100)
C2:
PF041448=SCAMP=PD(4.5=12.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTCACCTTCATGGCCCAG
R:
GTTGGGGGTGGCAGAATACTG
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]