RnoEX0078309 @ rn6
Exon Skipping
Gene
ENSRNOG00000054008 | Scamp5
Description
secretory carrier membrane protein 5 [Source:RGD Symbol;Acc:68356]
Coordinates
chr8:62220892-62225228:-
Coord C1 exon
chr8:62225127-62225228
Coord A exon
chr8:62224648-62224765
Coord C2 exon
chr8:62220892-62223018
Length
118 bp
Sequences
Splice sites
3' ss Seq
CAGCTCGCTCCTTCCTACAGCGG
3' ss Score
7.65
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GACAGACAGCTCCTTCAGCTTCATGGCATTCTTCTTCACCTTCATGGCTCAGCTGGTCATCAGCATCATCCAGGCTGTCGGGATTCCGGGCTGGGGTGTCTG
Seq A exon
CGGCTGGATCGCCACCATCTCCTTCTTCGGGACAAACATCGGCTCAGCGGTGGTGATGCTCATCCCCACGGTCATGTTCACGGTTGTGGCCGTCTTTTCCTTCATTGCCCTTAGCATG
Seq C2 exon
GTTCATAAGTTCTACCGGGGCAGCGGGGGCAGTTTCAGCAAAGCCCAGGAGGAGTGGACCACCGGAGCGTGGAAAAACCCACACGTGCAGCAGGCTGCCCAGAACGCAGCCATGGGGGCTGCTCAGGGCGCCATGAACCAACCGCAGACTCAGTATTCTGCCACTCCCAATTACACATACTCCAATGAGATGTGAGCCAGCCAAGCCCACCAGGAGGCAGGGCTGGGGGCCAGTGGGACAGGGGGCTCAAGCCACATCATCTGTGTGGTGACCAAGCAGGGTTCCCCCTTCCCTTTTCTCCTCCCCAACTTTGTACAAAGAATCAGAGTTATATATATATATATATGTATACGTATATGTATATGTCTATCCCCACCCCCACCCTTTGGGTCCTGCCCTTGGCACTCCGAGAGCTGCGTACTGCACAGGAAGTGTCTCTGTGCATTGGGAGCTGAGTCTATGTCCCCTTGTGAAATAACGTGCAGTGGAGAGCTCATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054008-'17-20,'17-17,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.2=100)
A:
PF041448=SCAMP=FE(22.0=100)
C2:
PF041448=SCAMP=PD(4.5=12.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTTCAGCTTCATGGCAT
R:
TGAGTCTGCGGTTGGTTCATG
Band lengths:
246-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]