DreEX0064327 @ danRer10
Exon Skipping
Gene
ENSDARG00000036911 | scamp1
Description
secretory carrier membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1803]
Coordinates
chr21:3564399-3568219:-
Coord C1 exon
chr21:3568118-3568219
Coord A exon
chr21:3565982-3566099
Coord C2 exon
chr21:3564399-3565747
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGTGTATGTGTATGTTTTAGTGG
3' ss Score
7.78
5' ss Seq
AAGGTGCTT
5' ss Score
4.72
Exon sequences
Seq C1 exon
GAGTGACAGCTCTTTTAGGTTCTTTGTATTCTTCTTCGTTTATATCTGCCAGTTTGGTGTCCATGTTCTGCAAGCTATTGGCATTACAGGCTGGGGAGCCAG
Seq A exon
TGGCTGGATCTCAGCACTGACCGGACTAAACACAAGTATTCCCGTGGGCATCATCATGATCCTGATCGCGGCCCTCTTCACCGCATCGGCAGTCATCTCTCTCATCATGTTTAAAAAG
Seq C2 exon
GTTCATGCGCTCTACCGAACCACCGGTGCCAGTTTCGAGAAGGCGCAGCAGGAATTCGCCACTGGCGTCATGGCCAACAAAACGGTGCAAACCGCCGCCGCTAACGCCGCCTCCTCTGCTGCCCGCGGAGCCTTCAAAGAGCAGATCTGATTGGTCCAGAGAAACGTCAATCCGTCCCTGCTGCTCTGACCCCGCCCCCTTAATTCCTCCCAATGTCCTTACAGCCAATCATCAGCTCCGACTGGCTGCTCAAGACCACGCCCATTCTCATTGACTTAATGCACTCCTGTGACTGACTGACTGAGACCCCGCCCACAGCCCCTCCCTCTCCCGTCAATCATTAGGAGTGTGTGTGTGTGGAAAGCCTGTATTGTGTGTAAACAGCCTGAAGAGTCACTTTATGTGTTCACATCACTGTCCGTTTGTCCCTGTTAAACAACAGGAAGTGATGTCGTCCAATGTCCTTTTATGGGATCCAAGGAGAAGACGAACGATTATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036911-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.1=100)
A:
PF041448=SCAMP=FE(21.9=100)
C2:
PF041448=SCAMP=PD(4.5=16.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGCATTACAGGCTGGGGA
R:
GGCTGTAAGGACATTGGGAGG
Band lengths:
252-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]