MmuEX0041129 @ mm10
Exon Skipping
Gene
ENSMUSG00000021687 | Scamp1
Description
secretory carrier membrane protein 1 [Source:MGI Symbol;Acc:MGI:1349480]
Coordinates
chr13:94201310-94210678:-
Coord C1 exon
chr13:94210577-94210678
Coord A exon
chr13:94208136-94208253
Coord C2 exon
chr13:94201310-94204163
Length
118 bp
Sequences
Splice sites
3' ss Seq
ACATGTCTGCTGTCCTTTAGTGG
3' ss Score
6.71
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAGCGACAGTTCCTTCAGGTTCTTTGTGTTCTTCTTCGTCTATATTTGTCAGTTTGCTGTCCATGTGCTCCAGGCTGCAGGATTTCATAACTGGGGAAACTG
Seq A exon
TGGTTGGATCTCGTCCCTCACTGGTCTCAACAAGAACATTCCAGTCGGGATCATGATGATAATCATCGCAGCGCTCTTCACAGCGTCCGCGGTCATCTCGCTCGTCATGTTTAAAAAA
Seq C2 exon
GTGCATGGACTGTACCGCACAACAGGTGCTAGTTTTGAGAAGGCCCAGCAAGAGTTTGCAACGGGAGTGATGTCCAATAAAACTGTTCAGACAGCGGCTGCAAACGCCGCCTCAACCGCAGCAACCAGCGCGGCGCAGAACGCCTTCAAGGGTAACCAGATGTAGCGAGCCTGGAAGCAGTTCTCTGTTTCCTTAGGACTGTATCTTTTTCTCCAGTTACTGTATTCTACAGATATTTTTTGTTGGAAACACACAATACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCTAAAAACCAGAGAAACTTCCTTGTCTTATTACTTTGCCTAATAGTTTCTTAATATTTCCATGCTCTGCACAGAAGAAAACTATCACCTGCTAAATAAATATTCTCCATATTTTTGGGGGATGGTGTTCCTCAGATTATTTCAGTGGTGACACACTGAAATGAGTATGTGACTTAAGATTTAAAAAGCGCTCGATAGTAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021687-'46-25,'46-24,49-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.1=100)
A:
PF041448=SCAMP=FE(21.9=100)
C2:
PF041448=SCAMP=PD(4.5=14.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACAGTTCCTTCAGGTTCT
R:
TTACCCTTGAAGGCGTTCTGC
Band lengths:
255-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types