GgaEX0005941 @ galGal3
Exon Skipping
Gene
ENSGALG00000004425 | SCAMP3
Description
NA
Coordinates
chrZ:22156766-22162184:-
Coord C1 exon
chrZ:22162083-22162184
Coord A exon
chrZ:22158235-22158352
Coord C2 exon
chrZ:22156766-22156955
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTTTTCTTCCTTCAGTGG
3' ss Score
8.71
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GAGTGACAGTTCATTCAGGTTCTTTGTGTTCTTCTTTGTGTATATCTGTCAGTTTGCTGTACATGTACTTCAAGCTGCAGGATTTCAAAGATGGGGAAACTG
Seq A exon
TGGATGGATTTCATCTCTTACTGGTCTTAATAAGAGTATTCCTGTTGGCATTATGATGATCATCATAGCTGCACTTTTCACAGCATCTGCTGTTATCTCATTAGTTATGTTTAAAAAG
Seq C2 exon
GTTCACGGTCTCTACCGCACAACTGGTGCTAGTTTTGAGAAAGCACAGCAAGAGTTTGCAACAGGAGTGATGTCCAACAAAACTGTACAAACTGCTGCAGCCAACGCCGCATCGACAGCAGCAACCAGTGCAGCTCAGAATGCATTCAAGGGTAACCGAATGTAGAGGAAATAAAAGAAGTTGTTACGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004425-'9-17,'9-16,11-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.1=100)
A:
PF041448=SCAMP=FE(21.9=100)
C2:
PF041448=SCAMP=PD(4.5=14.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGACAGTTCATTCAGGTTCT
R:
ATGCATTCTGAGCTGCACTGG
Band lengths:
247-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]