BtaEX6050866 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007371 | SCAMP1
Description
Bos taurus secretory carrier membrane protein 1 (SCAMP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076054]
Coordinates
chr10:9464639-9491091:+
Coord C1 exon
chr10:9464639-9464740
Coord A exon
chr10:9467357-9467474
Coord C2 exon
chr10:9490941-9491091
Length
118 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTAAAATTTCATAGTGG
3' ss Score
5.95
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAGTGACAGCTCCTTCCGGTTCTTCGTGTTCTTTTTTGTCTATATCTGTCAGTTTGCTGTGCACGTACTCCAGGCTGCAGGATTTCATAACTGGGGTAACTG
Seq A exon
TGGTTGGATTTCATCCCTTACTGGTCTCAACAAAAGTATTCCTGTTGGAATCATGATGATTATCATAGCAGCACTTTTCACAGCATCAGCAGTCATCTCACTAGTTATGTTTAAAAAG
Seq C2 exon
GTACATGGACTGTATCGCACAACAGGTGCTAGTTTTGAGAAGGCCCAGCAGGAGTTTGCAACAGGTGTGATGTCCAACAAAACTGTCCAGACCGCGGCCGCAAACGCAGCTTCAACTGCAGCGAGCAGTGCAGCTCAGAATGCGTTCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007371-'23-13,'23-11,24-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.1=100)
A:
PF041448=SCAMP=FE(21.9=100)
C2:
PF041448=SCAMP=PD(4.5=15.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCTCCTTCCGGTTCTTC
R:
TTGAACGCATTCTGAGCTGCA
Band lengths:
247-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]