HsaEX1036110 @ hg38
Exon Skipping
Gene
ENSG00000085365 | SCAMP1
Description
secretory carrier membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:10563]
Coordinates
chr5:78449933-78479071:+
Coord C1 exon
chr5:78449933-78450034
Coord A exon
chr5:78459245-78459362
Coord C2 exon
chr5:78475504-78479071
Length
118 bp
Sequences
Splice sites
3' ss Seq
CACTTTTTATTACTTTTTAGTGG
3' ss Score
7.13
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAGTGACAGTTCATTTAGATTCTTTGTATTCTTCTTCGTCTATATTTGTCAGTTTGCTGTACATGTACTCCAAGCTGCAGGATTTCATAACTGGGGCAATTG
Seq A exon
TGGTTGGATTTCATCCCTTACTGGTCTCAACCAAAATATTCCTGTTGGAATCATGATGATAATCATAGCAGCACTTTTCACAGCATCAGCAGTCATCTCACTAGTTATGTTCAAAAAA
Seq C2 exon
GTACATGGACTATATCGCACAACAGGTGCTAGTTTTGAGAAGGCCCAACAGGAGTTTGCAACAGGTGTGATGTCCAACAAAACTGTCCAGACCGCAGCTGCAAATGCAGCTTCAACTGCAGCATCTAGTGCAGCTCAGAATGCTTTCAAGGGTAACCAGATTTAAGAATCTTCAAACAATACACTGTTACCTTTTGACTGTACCTTTTTCTCCAGTTACTGTATTCTACAAATATTTTTATGTTCAAAACACACAGTACAGACAGCATGGATATTTCCTGTTCACTTGTGCATGGGCTAAAACCAGGAAAACTTCCTTGTCTTATTACTTTACCTAATAGTTTCTTAATATTTCAGTGCCCCTTGCAGAAAAAATATTACATGCTAAATAAATATTCTCCATATTTTTGGGGGATGACATTCAGTGAATTATTTCAGTGGTGACCCACTGAAAATTAATAATGGTACTTATGATTAAAAACGCATTTAATACTAACTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085365-'37-44,'37-37,42-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.1=100)
A:
PF041448=SCAMP=PD(0.1=0.0),PF041448=SCAMP=FE(76.5=100)
C2:
PF041448=SCAMP=PD(17.6=16.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTACTCCAAGCTGCAGG
R:
AGGTACAGTCAAAAGGTAACAGTGT
Band lengths:
247-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains