GgaEX0005941 @ galGal4
Exon Skipping
Gene
ENSGALG00000004425 | SCAMP1
Description
secretory carrier-associated membrane protein 1 [Source:RefSeq peptide;Acc:NP_001264922]
Coordinates
chrZ:22581912-22587620:-
Coord C1 exon
chrZ:22587519-22587620
Coord A exon
chrZ:22583671-22583788
Coord C2 exon
chrZ:22581912-22582391
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTTTTCTTCCTTCAGTGG
3' ss Score
8.71
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GAGTGACAGTTCATTCAGGTTCTTTGTGTTCTTCTTTGTGTATATCTGTCAGTTTGCTGTACATGTACTTCAAGCTGCAGGATTTCAAAGATGGGGAAACTG
Seq A exon
TGGATGGATTTCATCTCTTACTGGTCTTAATAAGAGTATTCCTGTTGGCATTATGATGATCATCATAGCTGCACTTTTCACAGCATCTGCTGTTATCTCATTAGTTATGTTTAAAAAG
Seq C2 exon
GTTCACGGTCTCTACCGCACAACTGGTGCTAGTTTTGAGAAAGCACAGCAAGAGTTTGCAACAGGAGTGATGTCCAACAAAACTGTACAAACTGCTGCAGCCAACGCCGCATCGACAGCAGCAACCAGTGCAGCTCAGAATGCATTCAAGGGTAACCGAATGTAGAGGAAATAAAAGAAGTTGTTACGGTTCTCTTTGATTGTGCTTTATTTTCAGGTCATTTATTCTGTTTCCTAAAAACCTAGAATAAAATTAACACAGCATGTTTGTCTTTTTACAGCTGTGCATGGGTAAAATGGGAAATGTTTGTTTTGATCTATTATAAATTTATTTATTTTGAAAGTAAGTTCTTTGCCCTTCCTTTAAATGTTGCTATCTATAATGTAAAGCCCTCTGTATTTTTGGGAGATAAATAATTTCAACAATTGGCCTCATATTAAATAATGGTATTTCATGATCAAATAAATATATTAGGAATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004425_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.1=100)
A:
PF041448=SCAMP=FE(21.9=100)
C2:
PF041448=SCAMP=PD(4.5=14.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTACTTCAAGCTGCAGGA
R:
AGCACAATCAAAGAGAACCGT
Band lengths:
248-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]