DreEX0064357 @ danRer10
Exon Skipping
Gene
ENSDARG00000040274 | scamp5b
Description
secretory carrier membrane protein 5b [Source:ZFIN;Acc:ZDB-GENE-120215-76]
Coordinates
chr18:50098727-50102177:+
Coord C1 exon
chr18:50098727-50098828
Coord A exon
chr18:50098972-50099089
Coord C2 exon
chr18:50101971-50102177
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCCGTCCTGTTCTAGTGG
3' ss Score
9.55
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GACTGACAGCTCGTTCTACTTCATGGCGTTCTTCTTTGTCTTCATGGCACAACTTTTCATCGCTATCATTCAGGCCATCGGTATTCCAGGATGGGGTGTTTG
Seq A exon
TGGCTGGTTGGGCACCATCTCCTTCTTCGGCACCAGTATCTTTGCTTCCATCATCATGTTGATCCCTACACTCATGTTCACCGCCGTCTCCGTCATCTCCTTCCTTGCACTAACGAAG
Seq C2 exon
GTTCATAACTTCTACCGTGGCAGTGGAGCCAGCATGAGTAAAGCGCAGGAGGAGTGGGTGTCTGGAGCCTGGAAAAACCCTCATGTTCAGCAGGCAGCGCAGCAGGCGGCTCTGAGTGCAGCAACTGGAGCCATGCAGAACCCACAGTCCCCGCAGTACTCCACCCCAACATATGACAACACCATGTAGACCTCCACCAACACAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040274_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.113
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.3=100)
A:
PF041448=SCAMP=FE(22.2=100)
C2:
PF041448=SCAMP=PD(4.5=12.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTATCATTCAGGCCATCG
R:
TGGTGGAGGTCTACATGGTGT
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]