HsaEX6084210 @ hg19
Exon Skipping
Gene
ENSG00000145244 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:19012]
Coordinates
chr4:47625588-47628538:-
Coord C1 exon
chr4:47628422-47628538
Coord A exon
chr4:47625916-47625965
Coord C2 exon
chr4:47625588-47625762
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTATGTTTCCAAATCCAGGCA
3' ss Score
7.97
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGAACCATCTGTGACCAAATTGATACAGGAACAGGAGAAAGAGCCGCGGTGGCTGACATTACACTCCAACTGGGAGAGCCTCAATGGGACCACTTTACATGAACTTCTAGTAAATGG
Seq A exon
GCAGTCTTGTGAGAGCAGAAGTAAAATTTCTCTTCTGTGTACTAAACAAG
Seq C2 exon
ACTGTGGGCGCCGCCCTGCTGCCCGAATGAACAAAAGGATCCTTGGAGGTCGGACGAGTCGCCCTGGAAGGTGGCCATGGCAGTGTTCTCTGCAGAGTGAACCCAGTGGACATATCTGTGGCTGTGTCCTCATTGCCAAGAAGTGGGTTCTGACAGTTGCCCACTGCTTCGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145244-'25-23,'25-22,26-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(39.8=100)
A:
PF154941=SRCR_2=FE(17.3=100)
C2:
PF154941=SRCR_2=PD(5.1=8.5),PF0008921=Trypsin=PU(19.7=76.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAACAGGAGAAAGAGCCG
R:
GTCCGACCTCCAAGGATCCTT
Band lengths:
147-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)