BtaEX6031079 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002199 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr6:67953233-67956560:-
Coord C1 exon
chr6:67956444-67956560
Coord A exon
chr6:67953562-67953611
Coord C2 exon
chr6:67953233-67953407
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTTTCCAAATCTAGGCA
3' ss Score
9.5
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGAACCATCTATGACCAAATTGATAGAGGAACAGGAGCAAGACCAACAGTGGCTTACATTACACTCCAACTGGGAGAGCCTTAATGCAACAACTTTGCAGCAACTACTGGTAAAAGG
Seq A exon
GCAGTCCTGTTACAGCAGAAGTAAGATTTCTCTCCTGTGTACTAAACAAG
Seq C2 exon
ACTGTGGGCGCCGCCCTGCTGCCCGGATGAACAAGAGGATTCTAGGGGGTCGGACAAGTCGCCCAGGAAGGTGGCCCTGGCAGTGTTCCCTGCAGAGTGAACCCAGTGGGCACATTTGTGGTTGTGTCCTCATTGCCAAGAAATGGGTTCTGACGGTCGCCCACTGCTTCGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002199-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(41.1=100)
A:
PF154941=SRCR_2=FE(17.9=100)
C2:
PF154941=SRCR_2=PD(5.3=8.5),PF0008921=Trypsin=PU(19.1=76.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAACAGGAGCAAGACCA
R:
GTCCGACCCCCTAGAATCCTC
Band lengths:
148-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]