MmuEX6018029 @ mm9
Exon Skipping
Gene
ENSMUSG00000005220 | Corin
Description
corin [Source:MGI Symbol;Acc:MGI:1349451]
Coordinates
chr5:72707263-72710874:-
Coord C1 exon
chr5:72710761-72710874
Coord A exon
chr5:72707581-72707630
Coord C2 exon
chr5:72707263-72707437
Length
50 bp
Sequences
Splice sites
3' ss Seq
TCTTATGTTTCCAATCATAGGCA
3' ss Score
8.43
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGAACCGTCTGTGACCAAGCTGATCCCAGGACAGGAAGGCCAGCAGTGGCTGAGGTTGTACCCCAACTGGGAGAATCTCAATGGGAGCACCTTGCAGGAGCTGCTGGTATACAG
Seq A exon
GCACTCCTGCCCAAGCAGAAGTGAGATTTCCCTTCTGTGCTCCAAGCAAG
Seq C2 exon
ACTGTGGCCGCCGCCCTGCTGCCCGAATGAACAAGAGGATCCTTGGGGGTCGGACTAGTCGTCCTGGGAGGTGGCCGTGGCAGTGCTCTCTGCAGAGTGAACCCAGTGGACATATCTGTGGCTGTGTCCTCATTGCCAAGAAGTGGGTCCTGACAGTTGCCCATTGCTTTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005220-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(39.2=100)
A:
PF154941=SRCR_2=FE(17.5=100)
C2:
PF154941=SRCR_2=PD(5.2=8.5),PF0008921=Trypsin=PU(19.7=76.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGTGACCAAGCTGATCC
R:
TCTTGTTCATTCGGGCAGCAG
Band lengths:
145-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: