DreEX0003055 @ danRer10
Exon Skipping
Gene
ENSDARG00000101281 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr23:44176317-44181756:+
Coord C1 exon
chr23:44176317-44176428
Coord A exon
chr23:44180429-44180478
Coord C2 exon
chr23:44181704-44181756
Length
50 bp
Sequences
Splice sites
3' ss Seq
ATATTATTTCCTGTCTACAGGCA
3' ss Score
9.62
5' ss Seq
ACGGTGTGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
ATGCAATGTTGGATGTATCTCCTGTTGTGAGACGCAAACGCTGGTTACATGTGGACCCAGACTGGAGTCCTGAGAACATGCTTCCTCTACAGGGCCTGCTGGAAAAACGAGG
Seq A exon
GCAGAGCTGTCAATCATACAAGAAGATCTCACTGCAGTGTACAAGAGACG
Seq C2 exon
AGTGTGGCCGTCGCCCTGCTGCCCGGTTGGTGAAGAGAATTCTGGGAGGCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101281_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(19.7=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAACGCTGGTTACATGTG
R:
TCGGCCTCCCAGAATTCTCTT
Band lengths:
133-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]