RnoEX6042308 @ rn6
Exon Skipping
Gene
ENSRNOG00000002302 | Corin
Description
corin, serine peptidase [Source:RGD Symbol;Acc:727887]
Coordinates
chr14:38454223-38458232:+
Coord C1 exon
chr14:38454223-38454336
Coord A exon
chr14:38457865-38457914
Coord C2 exon
chr14:38458058-38458232
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTATGTTTCCAAACCCAGGCG
3' ss Score
6.9
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGAACCATCTGTGACTGAACTGGTCCAAGGGCAGGAAGGCCAGCAGTGGCTGAGGTTGCACTCCAGCTGGGAGAATCTCAATGGGAGCACCCTGCAGGAGCTGCTGGTGCACAG
Seq A exon
GCGGTCCTGCCCAAGCGGAAGTGAGATTTCCCTTCTGTGTACCAAGCAAG
Seq C2 exon
ACTGTGGTCGCCGCCCTGCTGCCCGAATGAACAAGAGGATCCTTGGGGGTCGGACTAGTCGTCCTGGGAGGTGGCCGTGGCAGTGTTCTCTGCAGAGTGAACCCAGTGGACATATCTGTGGCTGTGTCCTCATTGCCAAGAAGTGGGTCCTGACAGTTGCCCATTGCTTTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002302-'30-21,'30-20,31-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(39.2=100)
A:
PF154941=SRCR_2=FE(17.5=100)
C2:
PF154941=SRCR_2=PD(5.2=8.5),PF0008921=Trypsin=PU(19.7=76.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTGAACTGGTCCAAGGG
R:
TCTTGTTCATTCGGGCAGCAG
Band lengths:
140-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]