GgaEX1017242 @ galGal3
Exon Skipping
Gene
ENSGALG00000014144 | F1NZW6_CHICK
Description
NA
Coordinates
chr4:68636407-68639665:+
Coord C1 exon
chr4:68636407-68636529
Coord A exon
chr4:68637899-68637948
Coord C2 exon
chr4:68639491-68639665
Length
50 bp
Sequences
Splice sites
3' ss Seq
GTTCTTTTTCCAATATTTAGGCA
3' ss Score
6.76
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGGACCATCTAAAACAATGATTGTATTAGAAGATGGAGAAATGCAGCAACAAAAGTGGCTGCATCTGCACTCAGACTGGAAGAGTAAGAATGCTTCCACTTTACATGCACTTCTAGTGAATGG
Seq A exon
GCAGATGTGCCAAAGCAGAAGCAAAGTGGCTCTACTTTGCACTAAAGAAG
Seq C2 exon
ATTGTGGCCATCGCCCTGCTGCTCGCATGAACAAAAGGATCCTTGGTGGCAGGACCAGTCGCCCAGGTCGATGGCCATGGCAGTGCTCTCTGCAGAGCGAGCCAAGTGGACACATATGTGGCTGTGTTTTGATTGCAAAGAGATGGGTCTTAACAGTAGCACACTGCTTTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014144-'18-22,'18-20,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(40.6=100)
A:
PF154941=SRCR_2=FE(16.8=100)
C2:
PF154941=SRCR_2=PD(5.0=8.5),PF0008921=Trypsin=PU(19.7=76.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAACAAAAGTGGCTGCAT
R:
TCCTGCCACCAAGGATCCTTT
Band lengths:
134-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]