HsaEX6095187 @ hg38
Exon Skipping
Gene
ENSG00000090006 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr19:40626975-40629818:+
Coord C1 exon
chr19:40626975-40627355
Coord A exon
chr19:40627705-40627857
Coord C2 exon
chr19:40629396-40629818
Length
153 bp
Sequences
Splice sites
3' ss Seq
GGTCCCCGCATTTCCCACAGGTT
3' ss Score
9.83
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
ATGACTTCGAGGCCCTGTGCAATGTGCTACGCCCCCCCGCATATAGCCCCCCGCGACCAGGTGGCTTTGGACTCCCCTACGAGTACGGCCCAGACTTAGGTCCACCTTACCAGGGCCTCCCATATGGGCCTGAGTTGTACCCACCACCTGCGCTACCCTACGACCCCTACCCACCGCCACCTGGGCCCTTCGCCCGCCGGGAGGCTCCTTATGGGGCACCCCGCTTCGACATGCCAGACTTTGAGGACGATGGTGGCCCCTATGGCGAATCTGAGGCTCCTGCGCCACCTGGCCCGGGCACCCGCTGGCCCTATCGGTCCCGGGACACCCGCCGCTCCTTCCCAGAGCCCGAGGAGCCTCCTGAAGGTGGAAGCTATGCTG
Seq A exon
GTTCCCTGGCTGAGCCCTACGAGGAGCTGGAGGCGGAGGAGTGCGGGATCCTGGACGGCTGCACCAACGGCCGCTGCGTGCGCGTCCCCGAAGGCTTCACCTGCCGTTGCTTCGACGGCTACCGCCTGGACATGACCCGCATGGCCTGCGTTG
Seq C2 exon
ACATCAACGAGTGTGATGAGGCCGAGGCTGCCTCCCCGCTGTGCGTCAACGCGCGTTGCCTCAACACGGATGGCTCCTTCCGCTGCATCTGCCGCCCGGGATTCGCACCCACGCACCAGCCGCACCACTGTGCGCCCGCACGGCCCCGGGCCTGAGCCCTGGCACCCGCTGGCCGCCCACCCGCGCCCGCCACTCGGGGCCCCTGCCGCGCATCCTGCAGCCCGCTTATGCGTATGTGCACGGGGCCGCCCGCCTGGACCTGGAGAAGGGACCTACGGACGCCTGGAAGCTGCGACGCCCTGCACTGCTCCCGCCTCCACCAGCGCCTCCCACTGATGTCGTGGTCCCGGGCCTGGCCCAGGGGCCCCTTTACATGCCCTCTCCCTTTTATAAAATTTTCCATTAAAAACCACCTATTTTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090006-'80-95,'80-90,83-95
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.802 A=0.080 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=3.9)
A:
PF146701=FXa_inhibition=WD(100=67.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF062476=Plasmod_Pvs28=FE(48.6=100),PF0764510=EGF_CA=WD(100=100.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCCTACGACCCCTACCCA
R:
GGCCTCATCACACTCGTTGAT
Band lengths:
252-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains