MmuEX6009251 @ mm10
Exon Skipping
Gene
ENSMUSG00000040488 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:MGI Symbol;Acc:MGI:1321395]
Coordinates
chr7:27305136-27306942:-
Coord C1 exon
chr7:27306562-27306942
Coord A exon
chr7:27306067-27306219
Coord C2 exon
chr7:27305136-27305550
Length
153 bp
Sequences
Splice sites
3' ss Seq
GGTACCTATGTTCTCTGCAGGAG
3' ss Score
7.57
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATGACTTTGAGGCCCTTTGCAATGTGCTGCGTCCACCTGCCTATGGCCCGCCGCGCCCTGGTGGCTTTGGAATTCCCTATGAATATGGCCCAGATATAGGCCCACCTTATCAGAGTCTCCCCTATGGGCCAGATCTGTATCCACCGCCAGTGCTACCCTACGACCCCTACCCACCCCCACCTGGACCCTTTGCTCGCCGGGAGGCCCCTTATGGCGCCCCACCCTTCGACATGCCGGACTTTGAGGATGATGGTGGCCCCTATGGCGAGTCTGAGACTCCTGACCCACCTAGCCGAGGCACTGGTTGGCCTTATCGGTCCAGAGACACCCGTGGCTCCTTCCCAGAGCCTGAGGAATCCTCTGAGCGTGGAAGCTATACAG
Seq A exon
GAGCCTTGTCTGAGCCCTATGAGGGCCTAGAGGCCGAAGAGTGTGGTATCCTGGATGGCTGCCCTCACGGCCGCTGTGTGCGCGTTCCAGAAGGCTTCACCTGCGATTGTTTCGATGGCTACCGCCTGGACATCACCCGCATGTCCTGTGTCG
Seq C2 exon
ACGTCAACGAGTGTGATGAGGCAGAGGCAACCTCCCCACTCTGCGTCAATGCGCGCTGTGTCAACACTGACGGCTCCTTCCGCTGTATCTGTCGTCCAGGATTTGCTCCCACGCATCAGCCACATCACTGTGCGCCTGCTCGACCCCGGGCCTGAGCAGGGGCGCCAAATCTCCCACTATACCTGAGCACCGGGAGCTTCCAGAGCACGCCTGCCTCCCTCCCTCTAGTCTGCATGTGTGCAAGGATGTCAGACAGTCTCGACTTAGGATGGACAGACACAGAGGGGTGCCTTCTATGGTGCCAGCCTGTCATGCCCAGTCCCTCCCACCAGTGCCCTGGGCCTGTCCTGGGTCCCCTGACACATTTCTTGCCCTTTTATACAATTTTCAATTAAAACACCTATTTTGTACTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040488-'65-69,'65-67,70-69
Average complexity
S
Mappability confidence:
83%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.777 A=0.129 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=3.9)
A:
PF146701=FXa_inhibition=WD(100=65.4),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=84.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGAGGATGATGGTGGCCC
R:
GGAGCAAATCCTGGACGACAG
Band lengths:
252-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types