HsaEX6096506 @ hg38
Exon Skipping
Gene
ENSG00000176024 | ZNF613
Description
zinc finger protein 613 [Source:HGNC Symbol;Acc:HGNC:25827]
Coordinates
chr19:51927220-51946623:+
Coord C1 exon
chr19:51927220-51927540
Coord A exon
chr19:51940617-51940709
Coord C2 exon
chr19:51944119-51946623
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTATCATTTCCTATGAACAGGGT
3' ss Score
6.99
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAAATAAATGAAACTTGGGCGCAGGATTTAGGTGCCAAAATATGGAGTTCTTCACCGTCCCGCGCTATCCCTGAATACTTGGGCAGAAAAGGTCCACTTTACCTTCCGTACGTGCAGGATTCAAAGATGGCTGCCTCCAGTATCCGTGACGAGAGGACGCGAACTTACTACCTCCCAGTCGTCCGTGCTCCGTACACCTGCAACTTCAGACCTTCCTCGGCCGCCGTAGGCCGGCTTGGAGGCTGGGGGAGGGCCCAGAAGTGGAATAATTCAGGAAAGTGCAGGTTCTGGGAAGTCTCGGTGGGTTCCCCGCAAAATCAG
Seq A exon
GGTATCAAGCCAGCAAACCAGATGCACTCTTCAAGTTGGAACAAGGAGAGCCATGGACAGTAGAAAATGAAATCCACAGCCAAATCTGTCCAG
Seq C2 exon
AAATCAAGAAAGTTGACAATCATCTACAGATGCACTCACAAAAGCAAAGATGTCTGAAGAGAGTGGAACAATGCCATAAACATAATGCATTTGGAAACATCATTCATCAGAGGAAAAGTGATTTTCCTTTAAGGCAAAATCATGATACATTTGACTTACATGGGAAAATACTGAAATCAAATTTAAGTTTAGTCAACCAGAACAAAAGGTATGAAATCAAGAATTCTGTGGGGGTTAATGGAGATGGGAAATCCTTCCTTCATGCCAAGCATGAACAATTTCATAATGAAATGAACTTCCCCGAAGGTGGAAATTCTGTGAATACAAATTCACAATTCATTAAGCATCAGCGAACTCAAAACATAGATAAACCCCATGTATGCACTGAGTGTGGGAAGGCTTTCCTCAAGAAGTCTCGCCTCATCTATCATCAGAGAGTTCACACTGGGGAGAAACCTCATGGATGCAGTATATGTGGGAAAGCCTTCTCCAGAAAGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176024_MULTIEX1-6/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.136
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTCAGACCTTCCTCGGC
R:
TGCTTTTGTGAGTGCATCTGT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains