HsaEX6097597 @ hg19
Exon Skipping
Gene
ENSG00000056097 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:17277]
Coordinates
chr5:32403211-32407126:-
Coord C1 exon
chr5:32406879-32407126
Coord A exon
chr5:32404011-32404202
Coord C2 exon
chr5:32403211-32403502
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTTATTTGAAACAGACT
3' ss Score
6.71
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTACGTCTTATTCAGGTTATGAAGCAGCAGTGTATTCAGCTGCATCTTCCTACTATCAACAGCAGCAGCAGCAACAGAAGCAGGCAGCAGCAGCAGCTGCTGCTGCTGCTGCAACAGCTGCCTGGACAGGGACCACCTTTACTAAAAAAGCACCATTCCAAAATAAACAACTGAAACCAAAACAGCCTCCCAAACCACCACAGATTCACTATTGTGATGTTTGTAAGATCAGCTGTGCTGGACCACAG
Seq A exon
ACTTATAAAGAACATTTAGAAGGACAGAAACATAAAAAAAAAGAAGCTGCATTGAAAGCCTCACAAAATACCAGCAGCAGCAACAGTTCTACTCGTGGGACTCAAAATCAGCTACGTTGTGAGCTCTGCGATGTGTCTTGTACAGGAGCAGATGCGTATGCTGCCCACATTCGTGGTGCTAAGCATCAGAAA
Seq C2 exon
GTGGTTAAGTTACACACAAAACTTGGTAAACCCATTCCATCAACAGAACCAAATGTTGTTAGCCAAGCTACTTCTTCAACAGCTGTATCTGCTTCAAAGCCGACTGCCTCTCCTTCAAGCATTGCAGCAAACAATTGTACTGTGAATACGTCATCAGTTGCAACGTCTTCAATGAAGGGTCTTACGACTACAGGAAACTCGTCTCTTAATAGCACATCTAACACTAAAGTATCAGCAGTGCCTACAAATATGGCTGCCAAGAAAACATCTACCCCCAAAATAAATTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056097-'9-9,'9-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.562 C2=0.949
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(52.0=15.7)
A:
PF128742=zf-met=PD(40.0=15.6),PF128742=zf-met=WD(100=39.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACCAAAACAGCCTCCCA
R:
AGACGTTGCAACTGATGACGT
Band lengths:
245-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)