MmuEX0053760 @ mm10
Exon Skipping
Gene
ENSMUSG00000022201 | Zfr
Description
zinc finger RNA binding protein [Source:MGI Symbol;Acc:MGI:1341890]
Coordinates
chr15:12146149-12150464:+
Coord C1 exon
chr15:12146149-12146396
Coord A exon
chr15:12149528-12149719
Coord C2 exon
chr15:12150173-12150464
Length
192 bp
Sequences
Splice sites
3' ss Seq
GTACTTTTTGTTCAAAACAGACT
3' ss Score
6.62
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTACATCTTATTCAGGTTATGAAGCAGCCGTATATTCAGCTGCGTCTTCCTACTACCAACAGCAGCAGCAACAACAGAAGCAAGCAGCAGCAGCAGCTGCTGCTGCAGCAGCAACAGCTGCCTGGACAGGGACCACCTTTACTAAAAAAACACCATTCCAAAATAAACAACTGAAACCAAAACAGCCTCCCAAACCACCCCAGATTCATTATTGTGATGTTTGTAAGATCAGCTGTGCTGGACCACAG
Seq A exon
ACTTATAAAGAGCACTTAGAAGGACAGAAACATAAAAAAAAGGAAGCCGCATTGAAAGCCTCTCAAAATACCAGCAGCAGCAACAACTCAACTCGTGGGACACAAAATCAGCTACGTTGCGAGCTCTGTGATGTGTCTTGTACAGGAGCAGATGCATATGCTGCCCACATTCGTGGTGCTAAGCATCAGAAA
Seq C2 exon
GTGGTTAAATTACACACAAAACTTGGTAAACCTATTCCTTCAACGGAACCAAATGTTGTTAGCCAAGCTACTTCTTCAACAGCTGCATCTGCTTCAAAACCAACTGCCTCTCCTTCAAGTATTGGCGCAAGCAATTGTACTCTGAACACGTCATCAATTGCAACTTCTTCAGTGAAAGGTCTTTCAACTACAGGAAACTCGTCTCTTAATAGTACATCCAACACTAAAGTGTCAGCGATACCTACCAATATGGCTGCCAAGAAAACATCTACACCCAAAATAAACTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022201_MULTIEX2-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=0.578 C2=0.857
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(52.0=15.7)
A:
PF128742=zf-met=PD(40.0=15.6),PF128742=zf-met=WD(100=39.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGCAGCAGCAACAACAG
R:
TGGCTAACAACATTTGGTTCCGT
Band lengths:
257-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types