RnoEX0101809 @ rn6
Exon Skipping
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62179007-62183141:+
Coord C1 exon
chr2:62179007-62179254
Coord A exon
chr2:62182217-62182408
Coord C2 exon
chr2:62182850-62183141
Length
192 bp
Sequences
Splice sites
3' ss Seq
GTACTTTTTGTTCAAAACAGACT
3' ss Score
6.62
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTACATCTTATTCAGGTTATGAAGCAGCCGTATATTCAGCTGCGTCTTCCTACTACCAACAGCAGCAGCAGCAACAGAAGCAAGCAGCAGCAGCAGCTGCTGCTGCAGCAGCAACAGCTGCCTGGACAGGGACCACCTTTACTAAAAAAACACCATTCCAAAATAAACAACTGAAACCAAAACAGCCTCCCAAACCACCCCAGATTCATTATTGTGATGTTTGTAAGATCAGCTGTGCTGGACCACAG
Seq A exon
ACTTATAAAGAGCACTTAGAAGGACAGAAACATAAAAAAAAGGAAGCCGCATTGAAAGCCTCTCAAAATACCAGCAGCAGCAACAACTCAACTCGTGGGACACAAAATCAGCTACGTTGCGAGCTCTGTGATGTGTCTTGTACAGGAGCAGATGCATATGCTGCCCACATTCGTGGTGCTAAGCATCAGAAA
Seq C2 exon
GTGGTTAAATTACACACAAAACTTGGTAAACCTATTCCTTCAACGGAACCAAATGTTGTTAGCCAAGCTACTTCTTCAACAGCTGTATCTGCTTCAAAACCAACTGCCTCTCCTTCAAGTATTGGAGCAAGCAATTGTACTCTGAACACGTCATCAATTGCAACTACTTCAGTGAAAGGTCTTTCAACTACAGGAAACTCGTCTCTTAATAGTACATCCAACACTAAAGTGTCAGCGGTACCTACCAATATGGCTGCCAAGAAAACATCTACACCCAAAATAAACTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627_MULTIEX2-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.414 C2=0.773
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(52.0=15.7)
A:
PF128742=zf-met=PD(40.0=15.6),PF128742=zf-met=WD(100=39.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTACCAACAGCAGCAGC
R:
TGGTTCCGTTGAAGGAATAGGT
Band lengths:
251-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]