BtaEX0040955 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008414 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
Coordinates
chr20:41306751-41311436:+
Coord C1 exon
chr20:41306751-41306998
Coord A exon
chr20:41310440-41310631
Coord C2 exon
chr20:41311145-41311436
Length
192 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTTGTTTGAGACAGACT
3' ss Score
1.92
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTACATCTTATTCAGGTTATGAAGCAGCAGTGTATTCAGCTGCATCCTCCTACTACCAACAGCAGCAGCAGCAACAGAAGCAGGCAGCGGCGGCGGCGGCGGCGGCTGCTGCAACAGCTGCCTGGACAGGGACCACCTTTACTAAAAAAGCACCATTCCAAAATAAACAACTGAAACCAAAACAGCCTCCCAAACCACCCCAGATTCACTATTGTGATGTCTGTAAGATCAGCTGTGCTGGACCACAG
Seq A exon
ACTTATAAAGAACATTTAGAAGGGCAGAAACATAAAAAAAAAGAAGCCGCATTGAAAGCCTCACAGAATACCAGCAGCAGCAACAACTCTACTCGTGGGACTCAAAATCAGCTACGTTGTGAGCTCTGTGATGTGTCTTGTACAGGAGCAGATGCATATGCTGCCCACATTCGTGGTGCTAAGCATCAGAAA
Seq C2 exon
GTGGTTAAATTACACACAAAACTTGGTAAACCCATTCCTTCAACAGAACCAAACGTTGTTAGCCAAGCTACTTCTTCAACAGCTGTATCTGCTTCAAAGCCAACTGCCTCTCCTTCAAGCATTGCAGCAAGCAATTGTACTGTGAATACTTCATCAATTGCAACTTCTTCAGTGAAAGGTCTTACAACTACAGGAAACTCGTCTCTTAATAGCACAGCCAACACTAAAGTATCAGCAGTGCCTGCAAATATGGCTGCCAAGAAAACATCTACACCCAAAATAAACTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008414_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.562 C2=0.857
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(52.0=15.7)
A:
PF128742=zf-met=PD(40.0=15.6),PF128742=zf-met=WD(100=39.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTACCAACAGCAGCAGC
R:
TGGTTCTGTTGAAGGAATGGGT
Band lengths:
251-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development