GgaEX1003131 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N855]
Coordinates
chr1:161050582-161054473:-
Coord C1 exon
chr1:161054229-161054473
Coord A exon
chr1:161052451-161052642
Coord C2 exon
chr1:161050582-161050867
Length
192 bp
Sequences
Splice sites
3' ss Seq
TGTATTATTTATTTAAACAGACT
3' ss Score
6.3
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GTACTTCTTATTCTGGCTATGAAGCCGCAGTGTATTCAGCTGCATCATCCTATTACCAGCAGCAGCAGCAACAGAAACAGGCAGTGGCAGCTGCTGCTGCTGCTGCTGCAACAGCCGCTTGGACAGGGACCACCTTTACTAAAAAGGCACCATTCCAAAATAAGCAACTGAAACCAAAACAACCTCCCAAACCACCCCAGATCCACTATTGCGATGTTTGTAAGATCAGCTGTGCTGGACCACAG
Seq A exon
ACTTATAAAGAACACTTAGAAGGCCAGAAACACAAAAAGAAAGAAACAGCATTAAAAGCTTCCCAGAACACCAATAACGGCAGCACTTCTGCTCGTGGAACTCAGAATCAGTTGCGCTGTGAGCTTTGTGATGTGTCTTGTACAGGAGCAGATGCATATGCTGCCCATATCCGAGGAGCCAAGCATCAGAAA
Seq C2 exon
GTAGTAAAATTGCACACAAAACTTGGCAAACCTATTCCTTCAACTGAACCAAATGTGGTTACCCAGGCTACTTCCTCAGCATCCACATCTGCTTCCAAACCAGCTGCCTCTGCTTCAAATGTGGCAACTAGCAGCAGTACTGTGAACTCTGTTGCATCCTCTGCAGTGAAAATTCTTACTCCTGTGGGAAACACACTACTTAACATGGCATCCAACAACAAAACATCTTCAATCACTGCTAATATAGCTGTAAAGAAAATATCTACACCAAAAATAAACTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014545_MULTIEX1-1/3=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.500 C2=0.562
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(52.0=15.9)
A:
PF128742=zf-met=PD(40.0=15.6),PF128742=zf-met=WD(100=39.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAAACAGGCAGTGGCAG
R:
GCTGAGGAAGTAGCCTGGGTA
Band lengths:
256-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]