DreEX0086425 @ danRer10
Exon Skipping
Gene
ENSDARG00000027109 | zfr
Description
zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
Coordinates
chr5:40534716-40537276:-
Coord C1 exon
chr5:40537038-40537276
Coord A exon
chr5:40536492-40536692
Coord C2 exon
chr5:40534716-40535004
Length
201 bp
Sequences
Splice sites
3' ss Seq
TACCGGCATGTTTATTTCAGACC
3' ss Score
7.1
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GAACATCATACTCGGGCTATGAAGCGGCAGTGTATTCGGCTGCCTCCTCTTACTATCAGCAGCAGCAACAGCAGCAAAAACAGGCAGCCGTTGCAGCAGCAGCCACTGCCGCATGGACCGGCAGTACATTTACCAAGAAAACTCCCTTCCAGAACAAAACTCTGAAACCTAAACAGCCCCCTAAACCACCGCAGATACATTATTGTGATGTTTGCAAGATCAGTTGTGCTGGACCCCAG
Seq A exon
ACCTATAAAGAGCATCTCGAGGGTCAGAAGCACAAAAAGAAGGAAGCTGCACTGAAGGTGTCACAGAGCAGCAGTAGCAGCAGTGGAGGCGGGAGCTCTGCCCGTGGGACACAAAATCAGTTGCGCTGCGAGCTCTGCGATGTCTCCTGTACTGGGGCTGATGCCTACGCTGCGCACATCAGAGGAGCCAAACACCAGAAG
Seq C2 exon
GTTGTAAAATTGCATACCAAGCTAGGAAAGCCGATCCCATCCACTGAGCCCAGTGTGGTTTCCCAATCTTCCACCTCCAGTACTGCAGCTCCGAATAAAACTTCCAGCTCCAACATCAACAGCTCCACAAGCACATCATCAAATGCTTCTTCCTCTGTTTCTGCCTCTTACTTAAAATCTGGCAGTATGGCTGCTTCTGCTGCACAGGGCAAGAGTTCAGGAGCCAACAGTGTCTCTGTCAACAGCTCCTCTATCAAGAAGGTCAACACACCCAAGATCAACTTCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027109-'10-11,'10-9,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.582 C2=0.856
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(52.0=16.2)
A:
PF128742=zf-met=PD(40.0=14.9),PF128742=zf-met=WD(100=37.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCAACAGCAGCAAAAA
R:
AGCTGTTGATGTTGGAGCTGG
Band lengths:
304-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]