HsaEX6100180 @ hg19
Exon Skipping
Gene
ENSG00000113073 | SLC4A9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:HGNC Symbol;Acc:11035]
Coordinates
chr5:139751036-139752428:+
Coord C1 exon
chr5:139751036-139751209
Coord A exon
chr5:139751827-139751982
Coord C2 exon
chr5:139752330-139752428
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCATGTTTCTATTCCTGCAGTTG
3' ss Score
8.3
5' ss Seq
GATGTGAGC
5' ss Score
4.72
Exon sequences
Seq C1 exon
TTCACTAATAGGGTGAAGCTGTTGTTGATGCCAGCAAAACACCAGCCAGACCTGCTACTCTTGCGGCATGTGCCTCTGACCAGGGTCCACCTCTTCACAGCCATCCAGCTTGCCTGTCTGGGGCTGCTTTGGATAATCAAGTCTACCCCTGCAGCCATCATCTTCCCCCTCATG
Seq A exon
TTGCTGGGCCTTGTGGGGGTCCGAAAGGCCCTGGAGAGGGTCTTCTCACCACAGGAACTCCTCTGGCTGGATGAGCTGATGCCAGAGGAGGAGAGAAGCATCCCTGAGAAGGGGCTGGAGCCAGAACACTCATTCAGTGGAAGTGACAGTGAAGAT
Seq C2 exon
TCAGAGCTGATGTATCAGCCAAAGGCTCCAGAAATCAACATTTCTGTGAATTAGCTGGAGTAGGAGTCTGGGAGTGGAGACCCCAGGAAACAGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113073-'20-24,'20-23,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.308 C2=0.059
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(13.9=58.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGTTGTTGATGCCAGC
R:
CATGCTGTTTCCTGGGGTCTC
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)