HsaEX6100180 @ hg38
Exon Skipping
Gene
ENSG00000113073 | SLC4A9
Description
solute carrier family 4 member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
Coordinates
chr5:140371451-140372843:+
Coord C1 exon
chr5:140371451-140371624
Coord A exon
chr5:140372242-140372397
Coord C2 exon
chr5:140372745-140372843
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCATGTTTCTATTCCTGCAGTTG
3' ss Score
8.3
5' ss Seq
GATGTGAGC
5' ss Score
4.72
Exon sequences
Seq C1 exon
TTCACTAATAGGGTGAAGCTGTTGTTGATGCCAGCAAAACACCAGCCAGACCTGCTACTCTTGCGGCATGTGCCTCTGACCAGGGTCCACCTCTTCACAGCCATCCAGCTTGCCTGTCTGGGGCTGCTTTGGATAATCAAGTCTACCCCTGCAGCCATCATCTTCCCCCTCATG
Seq A exon
TTGCTGGGCCTTGTGGGGGTCCGAAAGGCCCTGGAGAGGGTCTTCTCACCACAGGAACTCCTCTGGCTGGATGAGCTGATGCCAGAGGAGGAGAGAAGCATCCCTGAGAAGGGGCTGGAGCCAGAACACTCATTCAGTGGAAGTGACAGTGAAGAT
Seq C2 exon
TCAGAGCTGATGTATCAGCCAAAGGCTCCAGAAATCAACATTTCTGTGAATTAGCTGGAGTAGGAGTCTGGGAGTGGAGACCCCAGGAAACAGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113073-'24-31,'24-30,25-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.308 C2=0.059
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(13.9=58.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGTTGTTGATGCCAGC
R:
CATGCTGTTTCCTGGGGTCTC
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains