RnoEX0082891 @ rn6
Exon Skipping
Gene
ENSRNOG00000018525 | Slc4a9
Description
solute carrier family 4 member 9 [Source:RGD Symbol;Acc:628811]
Coordinates
chr18:29363825-29371573:+
Coord C1 exon
chr18:29363825-29363998
Coord A exon
chr18:29364908-29365063
Coord C2 exon
chr18:29368335-29371573
Length
156 bp
Sequences
Splice sites
3' ss Seq
GCTTGCTTCTGTTTCTGCAGTTA
3' ss Score
7.71
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
TTCATGAAGAGAGTGCAGCTGTTGCTGATGCCAAGGAAACATCAGCCAGACGTGCTGCTCCTGCGGCACGTACCTCTGATCAGAGTCCACCTCTTCACAGCCATCCAGCTTGCCTGCCTAGGTCTGCTTTGGGTAATCAAGTCTACCCCTGCAGCCATTGTCTTCCCACTCATG
Seq A exon
TTACTGGGCCTGGTGGCAGTCCGGAAGGCACTGGAGTGGATCTTTTCACCACAGGAACTCCTCTGGCTGGATGAGCTCATGCCGGAGGAGGAGAAGACCATCCCTGAGAACAGGCCAGAGCCAGAGCACTTGTTCAGTGGAAATGACAGTGAAAAT
Seq C2 exon
GTGCCAGAGAGATGATTCAGCAGTCAAGAGCGCATGCAGCTCTTCCAGAGGACCTAAGTATGATGCCCAACATCTATATGCAGCTTATAACTGTCCCTAACTCCAGTTCCAGGGGATCCAGCACCATGTGTTAGCTTCCTTGAGCACCAGGCATGCCCAAAGTACCCTTAAATACATGTGGTAAAATACTCATACACATAAAGTAAAAATAAATAAATCTTTAAAAATACGTTGTGGATAATCAGAAAAAAAAAAGACAATGAGTTAGGTGTGTTAATGTACACCTGAAATCTTAGCACTGAAGAGGCTGAAGTACAAGGATTTTAAGGTTGAGCCTAGCCTAGGCCACATGGTAGGTTCTGGCTAGCCTTAGCTACAGAGCAAGACTCTGTCTCAAAACACCCAAACCAAAGAACAGCCCCTAGTAACAGTGAATAGGAATGAAGACGTGGGTAAATGGTAAAGCTCCTGCTTAGAGAACACACGATCCCCAGCTACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018525_MULTIEX1-5/6=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.308 C2=NA
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCACCTCTTCACAGCCAT
R:
CATGCCTGGTGCTCAAGGAAG
Band lengths:
246-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]