MmuEX6001031 @ mm9
Exon Skipping
Gene
ENSMUSG00000024485 | Slc4a9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:MGI Symbol;Acc:MGI:2443384]
Coordinates
chr18:36699258-36700945:+
Coord C1 exon
chr18:36699258-36699431
Coord A exon
chr18:36700390-36700545
Coord C2 exon
chr18:36700853-36700945
Length
156 bp
Sequences
Splice sites
3' ss Seq
GCTTGCTTCTGTTCCTGCAGTTA
3' ss Score
8.41
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
TTCGTGAAGAGAGTGCAGCTATTGTTGATGCCAAGGAAACATCAGCCAGACATGCTGCTCCTGCGGCATGTGCCTCTGAGCAGAGTTCACCTCTTCACAGCCATCCAGCTTGCCTGCCTAGGTCTGCTTTGGGTAGTCAAGTCTACCCCTGCAGCCATTGTCTTCCCACTCATG
Seq A exon
TTACTGGGCCTGGTGGCCATCCGGAAGGCACTGGAGTGGGTCTTCTCACCACAGGAACTCCTCTGGCTGGATGAGCTGATGCCAGAGGAGGAGGAGACCATCCCCGAGAACAGGTCCGAGCCAGAGCACTTGTTCAGTGGAAATGACAGTGAAGAT
Seq C2 exon
TCAGAACTGATGTATCAGCCCAAGGCTCCAGAAATCAACATCTCTGTGAATTAGCTGGCGTCACAGTGTGGAGACCTCAGGAAACAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024485-'20-21,'20-20,21-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.337 C2=0.044
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(41.5=58.6)
A:
PF0095516=HCO3_cotransp=PD(1.5=13.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAGCTATTGTTGATGCCA
R:
CCTGAGGTCTCCACACTGTGA
Band lengths:
244-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: