HsaEX7004284 @ hg38
Exon Skipping
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100787889-100791113:+
Coord C1 exon
chr7:100787889-100788136
Coord A exon
chr7:100789218-100789347
Coord C2 exon
chr7:100790942-100791113
Length
130 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTCTTCCCTCTTTAGGTC
3' ss Score
13.46
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AGTCTGAACAATGCTCAGTCTATGGCGACCCCCGTTACCTCACATTTGACGGCTTCAGCTACCGCTTGCAAGGCCGCATGACCTATGTTCTGATCAAGACTGTGGACGTACTGCCTGAGGGGGTGGAGCCCCTCCTCGTGGAAGGACGCAACAAGATGGATCCGCCCAGGAGCTCCATCTTCTTGCAGGAAGTGATTACCACCGTCTACGGCTATAAAGTGCAGCTCCAAGCTGGTCTGGAGCTTGTG
Seq A exon
GTCAACAACCAGAAGATGGCCGTCCCCTACAGGCCAAATGAACACCTGCGGGTCACCCTGTGGGGCCAACGGCTCTACCTGGTCACCGACTTTGAGCTGGTCGTCAGCTTTGGTGGAAGGAAAAATGCAG
Seq C2 exon
TGATCTCCCTACCCAGCATGTACGAGGGGCTTGTGAGTGGCCTGTGCGGAAACTACGACAAGAACCGCAAGAATGACATGATGCTGCCCAGTGGCGCCCTGACCCAGAACCTCAACACCTTTGGCAACAGCTGGGAGGTGAAGACCGAGGACGCACTCCTGCGCTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-'38-40,'38-39,39-40=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.3=94.0)
A:
PF0009420=VWD=FE(27.7=100)
C2:
PF0009420=VWD=PD(20.6=55.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACTGTGGACGTACTGCC
R:
CACTGGGCAGCATCATGTCAT
Band lengths:
247-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains