BtaEX6110586 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36370157-36371983:-
Coord C1 exon
chr25:36371736-36371983
Coord A exon
chr25:36370540-36370669
Coord C2 exon
chr25:36370157-36370331
Length
130 bp
Sequences
Splice sites
3' ss Seq
CTCCCATCTGCCTCCTCCAGGTC
3' ss Score
10.93
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
AGTCGGAGCGATGCACGGTTTATGGGGACCCCACTTACCGCACGTTTGATGGCCTCGGCTACCGTTTCCAGGGCCGCATGACCTACTACCTGGTCAAGACCGTGGATGTGCTCCCCACTGGCGTGGAGCCCTTCATTGTGGAGGGACGCAACAAGATGTATGCGTCTCACAACCCCGTTTTCCTGCATGAAATCATCGTGATGGTCTATGGCTACACGGTCCAGCTCCAGCACGAACTGGAGCTTGTT
Seq A exon
GTCAATGGTCAGAAGGTGACTGCCCCCTATGAGCCCGTCGACCAGCTGCGGGTCTCCCTCCGAAGCGATCGCCTGTTTGTGATCACGGACTTTGAGCTGGTGGTCAGCTTCAACGGAAAGAACAATGCAG
Seq C2 exon
TGATCTCCCTGCCCCTCACTTACCGGAAGCTCGTGCTCGGCCTGTGCGGCAACTGCGACCAGAACAAGAGGAATGACTTTATGCTGCCCAACGGGGCCGTCACCCAGAATCTCCTTGCTTTTGGCAACAGCTGGGAGGTAAAGATGACCGAGGGAAGCTTGCCCCGCGTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432-'32-36,'32-35,33-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.3=94.0)
A:
PF0009420=VWD=FE(27.7=100)
C2:
PF0009420=VWD=PD(20.6=54.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGCCCTTCATTGTGGAG
R:
GCAAGGAGATTCTGGGTGACG
Band lengths:
244-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]