DreEX6005246 @ danRer10
Exon Skipping
Gene
ENSDARG00000056781 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:26085766-26086920:+
Coord C1 exon
chr7:26085766-26086013
Coord A exon
chr7:26086502-26086631
Coord C2 exon
chr7:26086719-26086920
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATACTGTTTTCCTCTATCAGGTC
3' ss Score
10.32
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
AATTCGATGACTGCACAATTGCTGGAGACCCTCACTATCGTACATTTGACAAATACAATCACCACTACCAAGGAGCGTATACCTATGTGTTGAGCCAAGACAACAATTTACCCAGCCACCTCACTCCTTTCATGGTCCGCGGCAAAAACCAGAGGCAAGGAGGTATCAGTCGGGTGTCCCTCCTGCGCGAGGTCTTTGTGGACGTGTACGGCATTACTGTCCGCATGCAACAGAATAAGAAAGTGCTG
Seq A exon
GTCAATGAAGAGAAGGTTGGTCTACCATACAGTCCTGTACAGGGAGTTAGCATCAAAACAAAATCTCGCTACGTGATGCTCACAACTGACTTTGGCCTTACTGTGCGTTTCGATGGCAGTTCCCAAGGAG
Seq C2 exon
TGGTGACTCTGCCAAGTGTATACAGGACTCGAGTGCTCGGTCTGTGTGGTAATTATGACGGACGCACTAATAATGAGTACACCAAACCAGACGGCACAGTCACCCGCGACCTCAATGTGTTCGGAGACAGCTGGAGAGTAACTGACAGAAGTGCAGCGGCTCTTCGTGCCACATCCCTGCCAAAGATGGTGCACCTACACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056781-'49-52,'49-51,50-52=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.3=94.0)
A:
PF0009420=VWD=FE(27.7=100)
C2:
PF0009420=VWD=PD(20.6=69.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTTGTGGACGTGTACGG
R:
CCATCTTTGGCAGGGATGTGG
Band lengths:
247-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]