RnoEX0002487 @ rn6
Exon Skipping
Gene
ENSRNOG00000056032 | AABR07035780.1
Description
NA
Coordinates
chr12:22377736-22379737:+
Coord C1 exon
chr12:22377736-22377980
Coord A exon
chr12:22378791-22378920
Coord C2 exon
chr12:22379465-22379737
Length
130 bp
Sequences
Splice sites
3' ss Seq
GCCGCGGTCTTCCGTTTAAGGTC
3' ss Score
9.64
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGCTGGAAAAATGTACCATCTTTGGGGACCCCTATTACCACACGTTCGATGGCTTCACCTACCGCTTCCTGGGTCGTATGAACTACTATCTCATAAAGACACTGGACAAGCTCCCAAGAGGGATTGAGCCGCTGATCATGGAGGGGCGCAACAAAATATCCCCCAAGGGGAGCTCAACCTTGCACGAAGTGACCACCATCGTCTACGGCTATAAAATCCAGCTCCAAGAAGGCCTGGGGGTTTTG
Seq A exon
GTCAACAATCAGAAGGTGTCGGTGCCCTATAATCCTAATGAGCACCTGCGGGTCATCTTGCGGGCTCAACGGCTGCTTCTCGCCACTGACTTTGAAATGGTGCTGGACTTTGACGGAAAGCACAGCGCAG
Seq C2 exon
TGATCTCCTTGCCTACCACATACCGTGGGCTGATACGGGGCCTGGTGGGAAACTATGACAAGGACCAAACCAATGACTTCATGTTGCCCAGTGGAGAGGTCACCTCAAACGTCCATGTCTTTGGCAACAGTTGGGAGGTGAAGGTGATGCATGCCTTCTTCCGATTCCCAAGGTGAGGGCTGGGGATCAAGGAGATGAGCAAGACTCTCTTTCACGGGAGGCATAAAGGGTTGAGCATAGGACCTTGTGCATGCAACCACTGAGCCACACTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056032_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACTGGACAAGCTCCCAAG
R:
CCACTGGGCAACATGAAGTCA
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]