MmuEX6021826 @ mm10
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137386910-137389076:-
Coord C1 exon
chr5:137388832-137389076
Coord A exon
chr5:137387821-137387950
Coord C2 exon
chr5:137386910-137387081
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCGCACTCTTCCATTCTCAGGTC
3' ss Score
9.33
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AACTGGAAAGATGTACCATCTTTGGGGATCCCTATTACCTCACGTTTGATGGCTTCACTTACCACTTCCTGGGTCGTATGAACTACTATCTCATAAAGACGGTGGACAAGCTCCCAAGAGGGATTGAGCCCCTGATCATGGAGGGACGTAACAAAATATCCCCCAAAGGGAGTTCAACCTTGCATGAAGTGACCACCATCGTCTATGGCTATAAAATCCAGCTCCAAGAAGAACTAGTGGTTTTG
Seq A exon
GTCAACGATGAAAAGGTGGCGGTCCCCTACAATCCAAACGAGCACCTTCGGGTCATGCTGCGGGCTCAGCGGCTGCTTCTCGTCACAGACTTCGAAATGGTGCTGGATTTTGATGGAAAACACAGTGCAG
Seq C2 exon
TGATCTCCTTGCCTACCACATACCGTGGGCTGACACGGGGCCTGTGTGGAAACTATGACAGGGACCAGTCCAATGAACTCATGCTGCCCAGTGGAGTACTCACCTCAAATGTCCATGTCTATGGCAACAGTTGGGAGGTGAAGGCGCAGCATGCCTTCTTCCGCTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-'97-105,'97-104,98-105=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.0=93.9)
A:
PF0009420=VWD=FE(27.9=100)
C2:
PF0009420=VWD=PD(20.8=55.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTACCACTTCCTGGGTCGT
R:
CATAGTTTCCACACAGGCCCC
Band lengths:
246-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types