GgaEX6046223 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NB86]
Coordinates
chr9:12635272-12637140:-
Coord C1 exon
chr9:12636890-12637140
Coord A exon
chr9:12636158-12636287
Coord C2 exon
chr9:12635272-12635440
Length
130 bp
Sequences
Splice sites
3' ss Seq
ACTTATTCTTTCCCTTTTAGTTG
3' ss Score
10.4
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTTTTGGCAAGTGCCGGATCATAGGCGATCCACATTATATCACATTTGATGGTTTGGTGCACCACTTCCAAGGGAAATACACGTATATTCTGACTCAGACCATCCCTGACCTACCTGATACTCTGACACAGTTCAGCGTCGAAGGCGTGAACTATCCTCTTCGTCTAAACCGACGCATTACTTACTTGAAAGAGATTATCATCAACGTTTACAATCACGAAGTGCGATTCAGGCAAGGCAAGCAGATACTG
Seq A exon
TTGGATGGTGTAAGGGTGAGAGCCCCTGTTCGTCCCCATGATGGTATTCGTATATATCAGAGGACAACAAGAATTTACCTGGAGACAGATTTTGGCTTATACCTGAGCTACGATGGTGATCAAAATGCAG
Seq C2 exon
ATATAAAGCTGGCCAACACCTACAACAACAGAGTAGAAGGTTTGTGTGGTGACTTTGACGGGAGACCTAGAAATGACTTCACAAACCCAGATGGTGTTTGGCTGAAGAATGTGAATGCATTTGGTGAGAGCTGGAAGGTTCCTGTGAAAAGAAGAACCTCTCGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007208-'23-23,'23-22,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.6=94.0)
A:
PF0009420=VWD=FE(27.6=100)
C2:
PF0009420=VWD=PD(20.5=56.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACCACTTCCAAGGGAAA
R:
CCCGTCAAAGTCACCACACAA
Band lengths:
257-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]