HsaEX7005671 @ hg38
Exon Skipping
Gene
ENSG00000160563 | MED27
Description
mediator complex subunit 27 [Source:HGNC Symbol;Acc:HGNC:2377]
Coordinates
chr9:131863063-131893992:-
Coord C1 exon
chr9:131893885-131893992
Coord A exon
chr9:131884058-131884099
Coord C2 exon
chr9:131863063-131863140
Length
42 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTCCTTTCCCCTCAGCTT
3' ss Score
10.41
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGACCTTGGGAAAGGTGTTGAAAGTGATCGTCGTCATGCGGAGCCTGTTCATTGATCGAACAATAGTAAAGGGATATAACGAGAATGTCTACACAGAAGATGGCAAG
Seq A exon
CTTGATATATGGTCCAAATCCAACTATCAAGTATTCCAGAAG
Seq C2 exon
GTGACAGACCATGCCACCACTGCCCTGCTCCACTATCAGCTGCCCCAGATGCCGGATGTCGTGGTCCGATCCTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160563-'37-38,'37-33,40-38=AN
Average complexity
A_C3
Mappability confidence:
100%=83=88%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF115713=Med27=PU(3.4=8.3)
A:
PF115713=Med27=FE(14.9=100)
C2:
PF115713=Med27=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGATCGTCGTCATGCGG
R:
CATCTGGGGCAGCTGATAGTG
Band lengths:
138-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains