MmuEX1017046 @ mm10
Exon Skipping
Gene
ENSMUSG00000026799 | Med27
Description
mediator complex subunit 27 [Source:MGI Symbol;Acc:MGI:1916225]
Coordinates
chr2:29500219-29522851:+
Coord C1 exon
chr2:29500219-29500326
Coord A exon
chr2:29509423-29509464
Coord C2 exon
chr2:29522774-29522851
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCTCTCCACAACAGCTG
3' ss Score
8.52
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGACCTTGGGGAAGGTGTTGAAAGTCATTGTGGTCATGAGGAGCCTGTTCATCGATCGCACGATTGTGAAGGGGTATAATGAGAGCGTCTACACAGAGGATGGAAAG
Seq A exon
CTGGACATATGGTCCAAATCCAGCTACCAAGTGTTCCAGAAG
Seq C2 exon
GTGACAGACCATGCCACCACTGCCCTGCTTCACTATCAGTTACCCCAGATGCCAGACGTCGTGGTCAGGTCCTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026799_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF115713=Med27=PU(3.4=8.3)
A:
PF115713=Med27=FE(14.9=100)
C2:
PF115713=Med27=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCATGAGGAGCCTGTTCA
R:
TCTGGCATCTGGGGTAACTGA
Band lengths:
133-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types