GgaEX1035817 @ galGal4
Exon Skipping
Gene
ENSGALG00000003683 | MED27
Description
mediator of RNA polymerase II transcription subunit 27 [Source:RefSeq peptide;Acc:NP_001264204]
Coordinates
chr17:6339037-6354245:-
Coord C1 exon
chr17:6354138-6354245
Coord A exon
chr17:6347652-6347693
Coord C2 exon
chr17:6339037-6339114
Length
42 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTTTCCTATTGCAGCTT
3' ss Score
10.73
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTTACCTTAGGAAAAGTGTTAAAAGTGATAGTGGTGATGCGGAGCCTCTTCATTGACCGGACCATAGTAAAAGGATACAATGAAAACGTCTATACTGACGATGGCAAG
Seq A exon
CTTGACATATGGTCCAAATCCAACTATCAGGTGTTTCAGAAG
Seq C2 exon
GTGACGGATCATGCGACCACTGCCCTGCTGCACTACCAGCTGCCCCAGATGCCCGACGTGGTAGTCAGATCTTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003683_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF115713=Med27=PU(3.4=8.3)
A:
PF115713=Med27=FE(14.9=100)
C2:
PF115713=Med27=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTCTTCATTGACCGGAC
R:
AGATCTGACTACCACGTCGGG
Band lengths:
139-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]