BtaEX0021881 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000382 | MED27
Description
Bos taurus mediator complex subunit 27 (MED27), mRNA. [Source:RefSeq mRNA;Acc:NM_001040546]
Coordinates
chr11:101979720-102008918:-
Coord C1 exon
chr11:102008811-102008918
Coord A exon
chr11:101997365-101997406
Coord C2 exon
chr11:101979720-101979797
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTTCCCCCCCACAGCTT
3' ss Score
11.36
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGACCTTGGGAAAGGTGTTGAAAGTGATCGTCGTCATGCGGAGCCTGTTCATCGATCGAACGATAGTGAAGGGGTATAATGAAAACGTCTACACAGAAGATGGCAAG
Seq A exon
CTTGATATATGGTCCAAATCCAACTATCAAGTGTTCCAAAAG
Seq C2 exon
GTGACCGACCATGCCACCACCGCCCTGCTCCACTACCAGCTGCCCCAGATGCCTGACGTCGTGGTCCGCTCCTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000382_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF115713=Med27=PU(3.4=8.3)
A:
PF115713=Med27=FE(14.9=100)
C2:
PF115713=Med27=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGATCGTCGTCATGCGG
R:
ATCTGGGGCAGCTGGTAGTG
Band lengths:
137-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development