RnoEX6016203 @ rn6
Exon Skipping
Gene
ENSRNOG00000013933 | Med27
Description
mediator complex subunit 27 [Source:RGD Symbol;Acc:1564993]
Coordinates
chr3:8032821-8056798:+
Coord C1 exon
chr3:8032821-8032928
Coord A exon
chr3:8041821-8041862
Coord C2 exon
chr3:8056721-8056798
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATTCTTCTCTCCCCCAACAGCTA
3' ss Score
10.03
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGACCCTGGGGAAGGTGTTGAAAGTGATCGTGGTCATGAGGAGCCTGTTCATCGACCGCACGATCGTGAAGGGGTACAACGAAAGCGTCTACACAGAGGACGGAAAG
Seq A exon
CTAGACATATGGTCCAAATCCAGCTATCAGGTATTCCAGAAG
Seq C2 exon
GTGACAGACCATGCCACCACTGCCCTGCTTCACTATCAGTTACCCCAGATGCCAGACGTTGTGGTCAGGTCCTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013933-'18-19,'18-14,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF115713=Med27=PU(3.4=8.3)
A:
PF115713=Med27=FE(14.9=100)
C2:
PF115713=Med27=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGGGAAGGTGTTGAAAG
R:
GATAGTGAAGCAGGGCAGTGG
Band lengths:
141-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]