HsaEX7105720 @ hg38
Exon Skipping
Gene
ENSG00000197070 | ARRDC1
Description
arrestin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28633]
Coordinates
chr9:137605654-137613510:+
Coord C1 exon
chr9:137605654-137605835
Coord A exon
chr9:137612896-137613006
Coord C2 exon
chr9:137613460-137613510
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGCAGCCATCCCCTTTGCAGCCA
3' ss Score
7.89
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGAGCCGGGACTCGCGGGCGGCGGGCGGGGGCGTCGCTGCGCGGCTGGCCGGTGAGGCCGCGGCATGGGGCGAGTGCAGCTCTTCGAGATCAGCCTGAGCCACGGCCGCGTCGTCTACAGCCCCGGGGAGCCGTTGGCTGGGACCGTGCGCGTGCGCCTGGGGGCACCGCTGCCGTTCCGAG
Seq A exon
CCATCCGGGTGACCTGCATAGGTTCCTGCGGGGTCTCCAACAAGGCTAATGACACAGCGTGGGTAGTGGAGGAGGGTTACTTCAACAGTTCCCTGTCGCTGGCAGACAAGG
Seq C2 exon
GGAGCCTGCCCGCTGGAGAGCACAGCTTCCCCTTCCAGTTCCTGCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197070-'0-7,'0-3,2-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PU(24.8=82.5)
A:
PF0033924=Arrestin_N=FE(27.8=100)
C2:
PF0033924=Arrestin_N=FE(12.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGGCGAGTGCAGCT
R:
AGGAACTGGAAGGGGAAGCTG
Band lengths:
162-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains