DreEX6011322 @ danRer10
Exon Skipping
Gene
ENSDARG00000068148 | arrdc1a
Description
arrestin domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030925-15]
Coordinates
chr5:28925148-28931795:-
Coord C1 exon
chr5:28931592-28931795
Coord A exon
chr5:28925287-28925397
Coord C2 exon
chr5:28925148-28925198
Length
111 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTACATCATAATCAGCCA
3' ss Score
2.97
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTCGGCCACAGGACAGGTAGGCATTTCCTTTATGCCTTGTGGATCAGTTTCGCTAACCCACCTGTTCGTGGTGGAAAAGGGACATAATGGGAAAGCTTCAGGAATTCGAAATAACTTTTGATAACAACAAAACGGTTTATAGTCCTGGTGAATCTCTCACGGGGACTCTGAAAATCTCAATCGCGCAGTCCATACAATGTAAAG
Seq A exon
CCATCAAAGTGAACTGCCAGGGCTTCTGTGGCGTTACCAGCAAATCAAATGACACCGATTGGACAGATGAGGAGCAGTACTTCAGCAGCTCTGTCTCAATAGCTGATAAAG
Seq C2 exon
GCACTCTCAAAGAGGGCGAGCACAGTTTTCCCTTCAAGTTTCTCTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068148-'2-1,'2-0,4-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PU(24.8=82.5)
A:
PF0033924=Arrestin_N=FE(27.8=100)
C2:
PF0033924=Arrestin_N=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGCCACAGGACAGGTAG
R:
CTTGAAGGGAAAACTGTGCTCG
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]