RnoEX0011915 @ rn6
Exon Skipping
Gene
ENSRNOG00000007622 | Arrdc1
Description
arrestin domain containing 1 [Source:RGD Symbol;Acc:1309961]
Coordinates
chr3:2131657-2136936:-
Coord C1 exon
chr3:2136805-2136936
Coord A exon
chr3:2132286-2132396
Coord C2 exon
chr3:2131657-2131707
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGACACCCTTCCCCTTACAGCTA
3' ss Score
11.55
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CGGGAGACCGCGGTATGGGGAGGGTGCAGCTCTTCGAGATCCGCCTGAGTCAGGGCCGCGTCGTCTACAGTCCTGGGGAGCCGCTGGCTGGGGCCGTGCACTTGCGCCTGGGAGCGCCACTACCCTTCCGAG
Seq A exon
CTATCCGGGTGACCTGCATGGGTTCCTGTGGGGTCTCCAACAAGGCCAACGATGGGGCATGGGTGGTGGAGGAGAGCTACTTCAACAGCTCCCTATCACTGGCTGACAAGG
Seq C2 exon
GAAGTCTGCCACCTGGAGAGCACAACTTCCCTTTTCAGTTCCTGCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007622_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PU(24.8=82.5)
A:
PF0033924=Arrestin_N=FE(27.8=100)
C2:
PF0033924=Arrestin_N=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGACCGCGGTATGGG
R:
GGAACTGAAAAGGGAAGTTGTGC
Band lengths:
173-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]