BtaEX6047462 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012147 | ARRDC1
Description
Bos taurus arrestin domain containing 1 (ARRDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080365]
Coordinates
chr11:105543445-105549236:-
Coord C1 exon
chr11:105549071-105549236
Coord A exon
chr11:105543777-105543887
Coord C2 exon
chr11:105543445-105543495
Length
111 bp
Sequences
Splice sites
3' ss Seq
ACACGGGCCCCACCTTGCAGCCA
3' ss Score
6.87
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGGCGGGGGCGAAGGAGGCTCAGTGCGGCCGCCCGGCAGGGCCGCGGTATGGGGCGGGTGCAGCTCTTCGAGGTCCGCCTGAACCACGGCCGCGTCGTCTACAGCCCGGGGGAACCGCTGGTGGGGGCCGTGCGCGTGCGCCTGGCGGCGCCGCTGCCCTTCCGAG
Seq A exon
CCATCCGCGTGACCTGCACGGGGTCCTGCAGGGTCTCCAACAAGGCCAACGACTCGGCCTGGGTGGTGGAGGAGAGCTACTTCAACAGTGCCCTGTCTCTGGCCGACAAGG
Seq C2 exon
GGAGCCTGCCTGCTGGAGAGCACAGCTTCCCCTTCCAGTTCCTGCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012147-'7-5,'7-1,18-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PU(24.8=82.5)
A:
PF0033924=Arrestin_N=FE(27.8=100)
C2:
PF0033924=Arrestin_N=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGAAGGAGGCTCAGT
R:
AGGAACTGGAAGGGGAAGCTG
Band lengths:
203-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]