MmuEX0006265 @ mm10
Exon Skipping
Gene
ENSMUSG00000026972 | Arrdc1
Description
arrestin domain containing 1 [Source:MGI Symbol;Acc:MGI:2446136]
Coordinates
chr2:24927126-24935252:-
Coord C1 exon
chr2:24935028-24935252
Coord A exon
chr2:24927729-24927839
Coord C2 exon
chr2:24927126-24927176
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGGCACCCTTCCCCTTACAGCTA
3' ss Score
11.13
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGCGGGTCCTGCGGCCTGGGCGTGTCCTCTGTCGGGGAGGGGAAGAGGGGCGGGCCTCGAAGCCACTACTCTAGCAGGCGTCAGACCGCGGCGCGGGAGACCGCGGTATGGGGAGGGTGCAGCTCTTCGAGATCCGCCTGAGTCAGGGCCGCGTCGTCTACGGTCCTGGGGAGCCGCTGGCTGGGACCGTGCACTTGCGCCTGGGAGCGCCACTGCCCTTCCGAG
Seq A exon
CTATCCGGGTGACCTGCATGGGTTCCTGTGGGGTCTCCACCAAGGCCAACGATGGGGCATGGGTGGTGGAGGAGAGCTACTTCAACAGCTCCCTGTCACTGGCTGACAAGG
Seq C2 exon
GAAGTCTGCCGGCTGGAGAGCACAACTTCCCTTTTCAGTTCCTGCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026972_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=WD(100=85.0),PF0033924=Arrestin_N=PU(13.0=7.5)
A:
PF0033924=Arrestin_N=PU(23.5=32.4)
C2:
PF0033924=Arrestin_N=PD(0.1=0.0),PF0033924=Arrestin_N=FE(73.9=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGCGTGTCCTCTGTC
R:
AAGGGAAGTTGTGCTCTCCAG
Band lengths:
244-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types