GgaEX1009230 @ galGal3
Exon Skipping
Gene
ENSGALG00000008475 | ARRDC1
Description
NA
Coordinates
chr17:2361839-2383635:+
Coord C1 exon
chr17:2361839-2362011
Coord A exon
chr17:2374508-2374618
Coord C2 exon
chr17:2383585-2383635
Length
111 bp
Sequences
Splice sites
3' ss Seq
ATGTTGTTTCTCTTTAACAGCCA
3' ss Score
9.7
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TGCGGAGCGGAGCGGCAGGGCAGGTAGCAACGGGGAGGAACGGGCCGGCGCGGCCATAAAGAAGGTGCAGCTGTTCGAGATCCGCCTGGGAGAGAGCCGCGTCATCTACAGCCCCGGCGAGCCGCTGGCCGGCACCGTCACCGTGCGGCTTTCGGGCTCGCTGCAGTACCGAG
Seq A exon
CCATCAAGGTGAGCTGCGTTGGATTCTGTGGGGTGTCAAACAAGATCAATGACACTGCCTGGACCGTGGAGGAGCAGTACTTCAACAGCACGCTATCTTTGGCAGACAAAG
Seq C2 exon
GAGTCCTTTCAGCTGGGGAGCACAACTTTTCCTTCCAGTTCCTGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008475-'0-1,'0-0,5-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PU(24.8=82.5)
A:
PF0033924=Arrestin_N=FE(27.8=100)
C2:
PF0033924=Arrestin_N=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGCAGGGCAGGTAG
R:
ACTGGAAGGAAAAGTTGTGCTCC
Band lengths:
203-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]