DreEX0014984 @ danRer10
Exon Skipping
Gene
ENSDARG00000079839 | arrdc1b
Description
arrestin domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-080515-2]
Coordinates
chr21:14612501-14666411:-
Coord C1 exon
chr21:14666098-14666411
Coord A exon
chr21:14622814-14622924
Coord C2 exon
chr21:14612501-14612551
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCTTTAATTATGTTTTGCAGCCA
3' ss Score
7.76
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CATTATGTCACGATTACTTGAAACAACCGTAAAGAGCAGAATGACTGACATCCCGATGACGTCAGCGCTCGCAAATGGGCGGAGTCTTGAGAGCCGCAGGTGGGACGTCAAACTGGACGCTGCTTTCACCCGTAGTTTAGCCGTCGATTTTTTTTTCTCATCCTCCGCGAGTGCGTGAGAGGCGCTTCTGGAAGACATGGGGAAGGTTCAGGAATTCGAGATTACTTTCACTAACAACAAAGTGGTCTACAACCCCGGTGAATCCATATCAGGAACTGTGAGAATTAAATCAAGCCACTCCTTGCAGTTTAAAG
Seq A exon
CCATTAAAGTCTGCTGTGTGGGATCGTGTGGCATCTCGTCCAAGCTGAACGATGCATCATGGATGCTTGAGGAAAAGTACTTGAGCAGCACACTGTCTGTGGCAGATAAAG
Seq C2 exon
GTACTCTGCCACCTGGTGAGCACAGCTTTCCGTTTCAGTTTCTCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079839_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PU(24.8=82.5)
A:
PF0033924=Arrestin_N=FE(27.8=100)
C2:
PF0033924=Arrestin_N=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAACTGGACGCTGCTTTCA
R:
ACTGAAACGGAAAGCTGTGCT
Band lengths:
246-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]