HsaINT0008597 @ hg19
Intron Retention
Gene
ENSG00000229089 | ANKRD20B
Description
ankyrin repeat domain 20 family, member A8, pseudogene [Source:HGNC Symbol;Acc:23666]
Coordinates
chr2:95456835-95458103:-
Coord C1 exon
chr2:95458058-95458103
Coord A exon
chr2:95456889-95458057
Coord C2 exon
chr2:95456835-95456888
Length
1169 bp
Sequences
Splice sites
5' ss Seq
GAAGTATGT
5' ss Score
6.97
3' ss Seq
TTCTTTCTTTTTTTTTCCAGCTG
3' ss Score
11.03
Exon sequences
Seq C1 exon
ATGGAGCCGGACTATGTAGAACAGATAACTAGAGAAACAAAGAGAA
Seq A exon
GTATGTTGCCAAAATTTATTAATTACATTTAGGTTTATTTTAGAAATAAAGTGTAAATAACAAATGGCATTCCTTTTCATTGTTTGGTTAGTAGATACTATGTCAAGTATTTTTTATCTTACACACATCTAATGCGAGATGTGAAAACAAAATCTTTCACAGAGAAGACTGTACTTATGCACCATAAATTCATCATGTTCCATAGCTTAAAAAATTCCCAAGAAGTCTATGCATCCATTTTTTACTGGCTCTACACTTTCTTAAGTTTTGCCATTCTCATGGAAGTGTCAGCCAGCACACTGAAACGATTCTCAGAAAACAAAGCCATCACCAAGTTCTCAGGGTTTTGGTAGAGATTGAAGGCCAACAGACCTGAGACTCATTTTGAAATCCTTAGCTGGGCAATAACCCTTCATAAGCAGTCACTTGACAGGTGACATTTTAAATCTCCTGTCATTTACTGTGTCATTGGCTTACATCTGTTCTCAGGAAAAGTTCCAAATTTTTCACCATGAAGTAAAAACACCCACATCAATGTGATGCTTGTCAAGTTACTCAGCCTTGCTTCTTGACACTTACCGCACTCTGCCCTTTGCTCTAGCACCAAAGTGGACAGAGTAGAACTCCGCAGGGCTCTTCCTCACCTCAGGCTCTTTGCCTTCGCCTCTTCCCTCTATCTGGCAAGCTTTTCCTTGTCCTTCAGGTATCAACCTATGTTATCTCCTCCACCAGAAAGCCCATGATATTGACATAAAAGTGGGATAGATGTCCCTTTTGTGTGTTCCAGTAGTGCCCTGCCGTATACCTGTCATAGTATCTATGACACTATGTGGACCTTGCCTGCCTGTCTGTTTTTTTAGGTTATAGCATATGACTGTTGAGAGGTGGCCCATACCATCTTCATCTTGGAATTCCAGTGCTGGTTCTAGGACCTTAGCACGTGGCTGTTGATTACATGAATGAAGAATGAAAAACCTCTGATATTTAAACACAATAGAATTAATGTCATGTGTAAATTATTTAATAGTAATTTTGTATTGTAAATGTACATACATATTTCTCATTCTTACTAACTCTGATAAAGTTCTCAACTCTTTAGTATTTAAACTCACATTTAGTTAACTGAAGTGTTTTAGGTAAAGAACATAATTCTTTCTTTTTTTTTCCAG
Seq C2 exon
CTGTTGCTGTGTTGGACACTTGCTCCCATCTACTTACTTCTCTATAATCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229089-ANKRD20B:NR_003366:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)