HsaINT0008882 @ hg19
Intron Retention
Gene
ENSG00000167612 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:13788]
Coordinates
chr12:52281793-52282602:+
Coord C1 exon
chr12:52281793-52282115
Coord A exon
chr12:52282116-52282351
Coord C2 exon
chr12:52282352-52282602
Length
236 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
CTCTCCATTCTGTGTTTTAGATG
3' ss Score
10.7
Exon sequences
Seq C1 exon
AGTCGTCTTTGTGAGCCCGCCCCGGCGGGGAGGAGCTGCCCGGCTCAGGCCCCGCCCACCCGGAGGATCTTGGGGCTGGTCTGAGTCCGCTCCTGAGACGTGACCACCCGCCCCGCATGGGGCCCCAGTCCCAGCTGCTTGATCCGGCTCAGCCCCGAGGTGTTTGCAGCAGCTCTTTATGAAAGTCCAGCCATCTGTTACCTGCGTTGCTTCCTGGGGAGGGATAGTCCACCTGGAGGCATTCGGAGACCCAGTGATTGTGCTCCGCGGAGCCTGGGCTGTGCCCCGCGTTGACTGCCTCATAGATACCCTACGAACCCCAA
Seq A exon
GTAAGAAAAAACGACGACCCTCTCTCCGTGAGTCTCACTGGGGTGCTGACCTAGAGTGAACCCTGCTTGCTTAGGGCTCCTGACCCAGCGCTTGTCCTTTCTCAGGGTGGATGGGGCGAGACCCCTGCTGGGATAAATGTTTTCCCTGGGGCAAGGGCTGTGCACTTCGCAGCTGCTGGGTCCCCTCCCTAGGATCCAGGGAGACACTCACTACTCCTCTCCATTCTGTGTTTTAG
Seq C2 exon
ATGCCAGCTGCATGAGAAAAGGGACTCACCTTCTGGTTCCCTGCCTGGAAGAGGAAGAGCTGGCATTGCACAGGAGACGGCTGGACATGTCTGAGGCACTGCCCTGCCCGGGCAAGGAGACCCCCACCCCAGGCTGCAGGCTGGGGGCCCTGTATTGGGCCTGTGTCCACAATGATCCCACCCAGCTCCAAGCCATACTGGATGGTGGGGTCTCCCCAGAGGAGGCCACCCAGGTGGACAGCAATGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167612-ANKRD33:NM_001130015:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.131
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(33.3=39.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTTCCTGGGGAGGGATAG
R:
GAGCTGGGTGGGATCATTGTG
Band lengths:
305-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)