HsaINT0008882 @ hg38
Intron Retention
Gene
ENSG00000167612 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:13788]
Coordinates
chr12:51887960-51888818:+
Coord C1 exon
chr12:51887960-51888331
Coord A exon
chr12:51888332-51888567
Coord C2 exon
chr12:51888568-51888818
Length
236 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
CTCTCCATTCTGTGTTTTAGATG
3' ss Score
10.7
Exon sequences
Seq C1 exon
ATCTCCGCCGGCGTCCCCAAGGCTGAGAGTGGGCGCGTCCGTCAGGAGGAGTCGTCTTTGTGAGCCCGCCCCGGCGGGGAGGAGCTGCCCGGCTCAGGCCCCGCCCACCCGGAGGATCTTGGGGCTGGTCTGAGTCCGCTCCTGAGACGTGACCACCCGCCCCGCATGGGGCCCCAGTCCCAGCTGCTTGATCCGGCTCAGCCCCGAGGTGTTTGCAGCAGCTCTTTATGAAAGTCCAGCCATCTGTTACCTGCGTTGCTTCCTGGGGAGGGATAGTCCACCTGGAGGCATTCGGAGACCCAGTGATTGTGCTCCGCGGAGCCTGGGCTGTGCCCCGCGTTGACTGCCTCATAGATACCCTACGAACCCCAA
Seq A exon
GTAAGAAAAAACGACGACCCTCTCTCCGTGAGTCTCACTGGGGTGCTGACCTAGAGTGAACCCTGCTTGCTTAGGGCTCCTGACCCAGCGCTTGTCCTTTCTCAGGGTGGATGGGGCGAGACCCCTGCTGGGATAAATGTTTTCCCTGGGGCAAGGGCTGTGCACTTCGCAGCTGCTGGGTCCCCTCCCTAGGATCCAGGGAGACACTCACTACTCCTCTCCATTCTGTGTTTTAG
Seq C2 exon
ATGCCAGCTGCATGAGAAAAGGGACTCACCTTCTGGTTCCCTGCCTGGAAGAGGAAGAGCTGGCATTGCACAGGAGACGGCTGGACATGTCTGAGGCACTGCCCTGCCCGGGCAAGGAGACCCCCACCCCAGGCTGCAGGCTGGGGGCCCTGTATTGGGCCTGTGTCCACAATGATCCCACCCAGCTCCAAGCCATACTGGATGGTGGGGTCTCCCCAGAGGAGGCCACCCAGGTGGACAGCAATGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167612:ENST00000301190:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.163
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(33.3=39.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTTCCTGGGGAGGGATAG
R:
GAGCTGGGTGGGATCATTGTG
Band lengths:
305-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development