HsaINT0015333 @ hg19
Intron Retention
Gene
ENSG00000124406 | ATP8A1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:13531]
Coordinates
chr4:42571178-42576724:-
Coord C1 exon
chr4:42576636-42576724
Coord A exon
chr4:42571223-42576635
Coord C2 exon
chr4:42571178-42571222
Length
5413 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TCTCTTCTTGCTTTCTGAAGCCA
3' ss Score
6.47
Exon sequences
Seq C1 exon
GTTAAATACATATTTTCTGACAAAACTGGTACTCTGACATGCAATGTAATGCAGTTTAAGAAGTGCACCATAGCGGGAGTTGCTTATGG
Seq A exon
GTGAGTTTTTTCCTTTAATTAGGATATGAAATACATGCTTAATTAGTGCTAACAGTTTGGTACATTTGGGAGTTCTTATTAGGGGAGGGTATGGGGTTGTTTGGTTTTTTTTAGTCTGAAAAGCAGCTGTTATAATTTTAGGACACATGTATATTTCGCGTTTCTAGTTTAGCATTGTTTTCATTTGGGATGACATGAGGTGGGTGCTCTGCCCAATGGTATTTTCAGTGTTTAGTGTTGCTGAAAGTCTCTCTCTTGCCCTGGTAATAAGGAACAAATATATTTCCTTTTACACTACTATAAACTGGAGTATAGCTTGGATCTGGTAAGGACAGATAATCAGGCCTTGAGCAGTTTTCAAGTTAAAATAGTGACAGTTACCCCTTTTGATACTTTTTTTTTCTTCTATCATCTCTCCTTTTTGCAGTCATAGAGCAATCTAAAATTCTGATGATGGAAAGGAGGTAGAGACATGAAACTCTTGAATCTGGAGGATAATTAATATCATCAGAAACTTTTATCAGGCTGTTAATTTCTTTAGAATTGCTTGTTGAGCACCCATTTAATTTATTTCTTACTTCCAGGTATGCTTACAAGCTGTTCCATAGCCTTCTCTTTAAAATATTTTATAGGGTAATGTGAGAAAATTAATTTCTACATTTCCTAGAAAAGACATCAAAAGGTGAAACACTCTCCTGGCTGGTTGACATTGGCCTATTGTCAAACTTGCCAATTATCCTTATCTACCTAGAAGTGAGACTAGTAAATATCAGCCTCCTACTCATACAAGCATGGACACTTGCTTCTAGGTTTTCTGGCTTGCACCCACTCTTCCCCACTCACTCTGAGCAGTAAGCCAGTGACAAAGAGTGTTACATTTTGAAATGCCTTAGTTAAAATTATAAATAAGTAAACATTTCATGAAAAATCCCAAAAGTATATGGTTATTCCTAGATATCCTTGTTCTTTGCGTTACGAGAGCATGACTAAAAATGACTATAAACTATATGTATAAACGAGGTTAAAAAGGCAGTTGAGTGGCTTTTTCACACTGTAAAGACAGCCTGTTGATTTAAGAAGCATACTTACTGCTTCCCGGGCTGGATGCTGTTTTTCATCTTTCTTCTTTATCTGAAGATGTTCTAATTTCCTTAGATGTAAGAGGCTCACCTGCCTCCTCCACCCTCCTCCCAACAAATTGCTACTGGAGCAGGAGAGTTGCAGCCACACTTTTTGACATCTTGTACTTATATATTCTACCCACAATCATCCCAGAGGAGAAAAGTAAAGCCTATTGCAATTCTAGAGTTCTCAGATTTATGATGATTTTTTTACACAAATTCTGTATTCATTCATAACTAGTATTTCCACAATGGCCTGTTTAATAATTGGCATTGTTTTTTACTTTGTGTGATTTTATAATTCAATAAGCAGGTTCATCAAATTAGTAATTATTGATTGTGAAATTTTCAGAACAGAAAGCTAAAATCAGATCTAGCCTCTGTTTTCTTCCGCATTTTATCAGGTTTTTTCTTATTCTTGGAAGAGGTCCTTAAACACTCCTAGGCAGTAGTTCTAAAGAGCAGTGCCCATCTGTGTCTGTTGACAATGTCATCATTAACAACTGTTATAGGGTGGGTCTGAGCTCAGTATTGTCATCATTGAGATTAAATTGCCAGTGAAGTGAATTTCTTCCTGAGGAAATAATATTTCTTAATCCTGAGATACAGTCAGAAGCCATGAGTTCTGGCTTTGTCTAGAATTTACCATGTAATCCTAGAAAATCTATTTTCAGATATTCCCTACTCTTTAAGATGTGGATAGTGAGACCAAACCATTTCTAAAGTCCTTTTCCAGATACGAAATCTAACATAATGTTTAGAAATAAACAGAAGTTTATTTGTTTGCAAATTTTAACTGTATAAGCCGAAATCTGTTTCCTTTTTAGTTATGGTATCATATTTTCAAGGATACCAGAAGCCATGTAGAGTAAAGCTAGTTAAACTGCTTCCAGTGATCATGTTTGTGTATGTGCTTTTAGGCATCCTTAACCTTGAGTTTTTATCAGTGTTCCCTCCCAAACACATCCTGGTGGATTATTGGACTGTTAGCATCGTAGAGAGTTGTTGATGTCTGAAAGTTTTGGAGAAACCGTGACTTCTGACTTGACCACATGTTTACAGCAGGGAAAATAACACTGTTACTTAATTACAGCCAGTCTCCATGGTTAGATGTGAAGGGGTGAGAGAGAGTAATTACTGTCTAGCACTTTTCTGTGTAGATTTCCTCTGGGCACTCTTGGATTATGGGAATCCAGATGGGGGAAATGACCTGGCTTTGCTATCTTATTTTCCCCAGAGCAGCATTTAACAATTGCTTAATATGGGAACTATTATGTATGAGCACTTTTAACCCCAGTGGAAGAAAGCAAGGTGTTTATGCCCCTAGGGAGGTGGCAAAACCAGAGAGTAACACAAAATTTCATATCCTGACAAAAGCCTTTGGTGTTACAAGTGCAGAGCTGATTTTGCCTCAGTGTTGCCAAAACATCAGGTACAGCTCAGTTTCACCCCAGATAGGGTTCAAGTGAGTTCTGTTGTGTCTTATCAGAAGAATAAGGCTTGAAGTTTCCTGATAGTATAATTCCTAGCTAGTTCTGGGTATTCCATGTTTGTAAGAAAATTATAATTAACACTTAAAACCGTGCATCAGAATTTAATTTTAATAAATTTTCTTTGATTTCCCTGAACCTTCGCCCCAAATTGGATTCATGATGGGCAATAAAATAGATTTGTACATAGTTGCCAATGATGATTATCTTGTAGAAATCAACTTTTAGTTAGGAATGCACTGCAAAATTATTAGATTATTTCATTAGATCTTTTTATGGGACAATTACAGTAAAATGTAAGTGAATTGTGATATCATTTGTAAATTTAACTTATGACAAACCAGACATTTTACTGTAAACATTAGTTATTAAAGTATCATTTCAGCTAATTGCTTCTTGTAGGGAATAAGTCAGTTTTATAATAGTTACTTGAATACCCGGAATAGGTAAGCAGTTTCTCTGTTCAGGGGCCACAAATCTCAATAGAGTGAAGATTCTGGGATACAGTCCTAAGTGCCATCTTTGTAAAAAAAAAAAAAAAAAATTTAGACCTTTTAGAATAAGTTGGATGAGGCTTAACAAGATACAGTCTATAAAAAGAAATTCTGTTAAGCAAACAAAATGCTTTTTTGTGTGGACAAGGCATTTAATTCGTATTAAAAACATCATTTGCATTTTCCCTTTAAATGAAAAATAAGTTTTTAAAAGCAATCTTTATATATGAATATACTGTGTGAATAACTTTACTTGACAGTATTTGGTTTAGCTATATATTTGCTGGAAGGATCGGCTACTTCTTTAACCCCAAGAAGAGACTCACCACGAGAAATTTCACGATTATCATAATACTATCCCCCAAGATCTTGCTACAGCCATGTTTATCTTACTGCTCACCATGACTTGTGATAAATTCTAGTCAACTCCATTCATTTATTTATCTGTATATCTCAAGTGTTGATGTATGTGACACTTTGATAGATAATGCAGGTAAAAAAGGCAAAAGTTCACATGATTTCCTCCTGCCTAAAGTGTATAGTCTAATTGGCACTTAGTGGATGCTAATTAAGTAATCATACAGACAAATATAAAGTCCTAACACAGTATAGAGGTCTATGTGAGGCTATAATGGGTGGTTTGATCTAAACAGGGAAGGCAAGGAAATATGCCCTAAGAAAGTGATTCTGGAGTTGAGATCTAAGAATGAATTTGATTAAGTGAAGAACTTACCAGGTAGATGTTATAGCACTGGCACATACAAAGGCAAAAAGCCAGATACCACGTAGACACCAGAGCTTCTGGAGCAGCAATAACAGGGAAACTTGCATATAGGATCAGTGGCAGGTTTGCAGGCCACCTACTGCTCATCGGGCTCTAGGTAGTGCTCAGCATTCTTCCAGGGCTGCGCCAGAGTTGTGAAGAGGGTCTCTGGCACTTGAGCTCTGGAGCTTTTAAGCTGCATGACTTGGGAAACTTTATCCCCTGTCCTGGTATGAGATTGGGGCTAGTGCAGCTTGGCAGGACCATGCACAGTGTTGCTTGGTTAGTACCAGGCCCTTCCCTGGCACAGTCCATGGGCTAGGGTCCAAGCCTTGAGGCTGATCTGAAGTGATTGCTTTAAACATGGAGTTGCAGCCAGTTTCCACAGAGCTTTGCAGCATGCCAACTCCTTTTCTTGGAGTCCAGCCCACAAAGGGCTTGATTAGCCCTTCTTCTTAAGCAGGCACAAAAGCCCTTTGGTAGGAGAGAGAATAGTGAGTTAAAAGGGACCACCTCCATTGTGATTGGAGTGATATAGTGGATACTGCACTGGAAGCAAATTAATGTTTTGGTAGTGGAAGAGGTGCCTTGGAATGATGAAGTCCCTGCCTTGGCTGGGTTGATGAAAGATTGAACTTTTAGGAAGTGAAAGGATCCCATGAGTTTTTAACAAAGTTTATTGTATATTCGTCAAAAATAACAGTGACTTTTCATTTGTACTGAACTCTGCATTTTAAAACTCCATGTCTAATAAATTTACAGGAAAAGTATATGATTATATTATGAAAGAAATGGAAAATAAAAAAATCTGGTCTGTCATGTATTATGGGCCCCTTCCAATTGAATACATGACTGGCTGAAATGAAGTACATCTATCAGACTTTCCTAGTGTTCAGATGAGCGAATGGATGAAATTAAAGAAGATATTAATGAATATGTTTCCTGTTTGAAATAAAGAGTGTTTTAATGAGTGAAATAGTTTAAGTGAAAATTTTTTAATATCATTTAAATTCTTAAACTAAGGTTCCATTTAATTATAGAAATGCAGGTAACTTTTACTTTAATGTACCTGTTGAAGTAACCATCATCTCGTGGTAGCCAAAGTTACTTCTAAAATGTATTTGACAAATTTTATTAGTGTGATAATTTGTTTCAAGATATTAGCATGTTTGTTACCTTGAAACACTTTATTCTGATTATATAACACATATGATTAATTTTCCATTGGCTTTAGCATTTCAACTGCTAAGTTGAAATAATTCCTACTGAATTATGAACTTTGTGAATAAAATCAGTAAATGTTCTGGTGAAGAGGCAAATTGGCTATACAGTTACAGGATAACTTTGTAAACCTGCTGAGCTACCATGAATCATTATGTTCTATTTGCTGTACTAACTGCCATTCTTTCAGATTCAACTAAAAGTTCATTTTGTTAACTTTTCAGTGATCCATCTTTTTATACTTCCCTTCTTCGTGGTTTTATGTTTCCAGCCTTTCTGTGATTATTTTTCCTCTCTTTCTGCCTCTCTTCTTGCTTTCTGAAG
Seq C2 exon
CCATGTCCCTGAACCTGAGGATTATGGCTGCTCTCCTGATGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124406-ATP8A1:NM_006095:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.312
Domain overlap (PFAM):
C1:
PF127102=HAD=PU(6.7=86.7)
A:
NA
C2:
PF127102=HAD=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)